miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12389 3' -59.5 NC_003324.1 + 3610 0.67 0.423323
Target:  5'- uGCAGCcGGUucCGCUcccAUGACGCCGa -3'
miRNA:   3'- uCGUCGcCCGu-GCGGu--UACUGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 17769 0.67 0.423323
Target:  5'- cGCcaucaGGGCcaucAUGCCGGUGAUGCCGg -3'
miRNA:   3'- uCGucg--CCCG----UGCGGUUACUGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 7658 0.67 0.414123
Target:  5'- cGGCAGUGccGGCugGCguuuauGUGuCGCUGCa -3'
miRNA:   3'- -UCGUCGC--CCGugCGgu----UACuGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 3639 0.67 0.414123
Target:  5'- uGCauGGCGGGCGCcaCCGAa-GCGCCGUu -3'
miRNA:   3'- uCG--UCGCCCGUGc-GGUUacUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 17179 0.67 0.405046
Target:  5'- aGGC-GCuGGCGCGUCugucgGACGCgGCu -3'
miRNA:   3'- -UCGuCGcCCGUGCGGuua--CUGCGgCG- -5'
12389 3' -59.5 NC_003324.1 + 31636 0.67 0.405046
Target:  5'- uGGCAuaucgagaccGCGGGCGCGC--GUGGCgGCCa- -3'
miRNA:   3'- -UCGU----------CGCCCGUGCGguUACUG-CGGcg -5'
12389 3' -59.5 NC_003324.1 + 56626 0.67 0.402348
Target:  5'- gGGUcGCGGGCAacuuCGCCcgcaucgcaugccaAAUGuugugcgcaGCGCCGCg -3'
miRNA:   3'- -UCGuCGCCCGU----GCGG--------------UUAC---------UGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 1532 0.68 0.396096
Target:  5'- cGGCAGUGGuGCGCGgCGcuAUGGCcCCGa -3'
miRNA:   3'- -UCGUCGCC-CGUGCgGU--UACUGcGGCg -5'
12389 3' -59.5 NC_003324.1 + 43107 0.68 0.387275
Target:  5'- cGcCAGCGGGCAuaaUGCCAAaGuC-CCGCa -3'
miRNA:   3'- uC-GUCGCCCGU---GCGGUUaCuGcGGCG- -5'
12389 3' -59.5 NC_003324.1 + 44671 0.68 0.378584
Target:  5'- uGCAaCGGGCAguuccuCGCCGccGUGuCGCUGCc -3'
miRNA:   3'- uCGUcGCCCGU------GCGGU--UACuGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 26016 0.68 0.378584
Target:  5'- gGGguGaCuGaGCGCGCCAAUGGCGUCa- -3'
miRNA:   3'- -UCguC-GcC-CGUGCGGUUACUGCGGcg -5'
12389 3' -59.5 NC_003324.1 + 22261 0.68 0.378584
Target:  5'- cGCGGCGaGCuGCGCCu-UGAUGUCGUc -3'
miRNA:   3'- uCGUCGCcCG-UGCGGuuACUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 11556 0.68 0.378584
Target:  5'- cGGCcuuuGCGGGCGagcaGCCGAUGcuGCucCCGCg -3'
miRNA:   3'- -UCGu---CGCCCGUg---CGGUUAC--UGc-GGCG- -5'
12389 3' -59.5 NC_003324.1 + 54263 0.68 0.377722
Target:  5'- cGCuGCGuGGUcacagacugcaacACGCCGAcaUGACGCgGCc -3'
miRNA:   3'- uCGuCGC-CCG-------------UGCGGUU--ACUGCGgCG- -5'
12389 3' -59.5 NC_003324.1 + 35127 0.68 0.370024
Target:  5'- cGGCAGCGacgacgaucaGGC-CGCUGcUGcCGCCGCc -3'
miRNA:   3'- -UCGUCGC----------CCGuGCGGUuACuGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 15224 0.68 0.361598
Target:  5'- cGGCGGCGaGCcuuuucacgugGCGCCGugucGACGCCGa -3'
miRNA:   3'- -UCGUCGCcCG-----------UGCGGUua--CUGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 13725 0.68 0.361598
Target:  5'- cGGCGGCaGGCAC-UgGAUGACGCgGg -3'
miRNA:   3'- -UCGUCGcCCGUGcGgUUACUGCGgCg -5'
12389 3' -59.5 NC_003324.1 + 45891 0.68 0.353307
Target:  5'- -uCAuCGGGCACGCUccucauucGGCGCCGCc -3'
miRNA:   3'- ucGUcGCCCGUGCGGuua-----CUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 24187 0.68 0.353307
Target:  5'- gAGCAGaacuacgacaaGGGUaucaGCGCCAccGUGGCGCagCGCa -3'
miRNA:   3'- -UCGUCg----------CCCG----UGCGGU--UACUGCG--GCG- -5'
12389 3' -59.5 NC_003324.1 + 32092 0.69 0.34515
Target:  5'- cGCuGCGccucGGCucguCGCCGGUGAgGCCGa -3'
miRNA:   3'- uCGuCGC----CCGu---GCGGUUACUgCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.