miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12389 3' -59.5 NC_003324.1 + 18817 0.66 0.461309
Target:  5'- cGCGGCGaaGGUcgGCGCCAGUcuccaucACGCCGg -3'
miRNA:   3'- uCGUCGC--CCG--UGCGGUUAc------UGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 17598 0.66 0.461309
Target:  5'- cAGaUAGUGccccGGCGCGCCGuugagcacGAUGCCGCc -3'
miRNA:   3'- -UC-GUCGC----CCGUGCGGUua------CUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 20581 0.66 0.461309
Target:  5'- uGGCgAGCGGGauccggUGCU-GUGGCGCCGUc -3'
miRNA:   3'- -UCG-UCGCCCgu----GCGGuUACUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 28701 0.66 0.460337
Target:  5'- cGCGGUuuuaaaggucuGGGCagGCGCCGAaaccUGcucugcaguucccGCGCCGCg -3'
miRNA:   3'- uCGUCG-----------CCCG--UGCGGUU----AC-------------UGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 56537 0.67 0.451641
Target:  5'- uGGCAugcgauGCGGGCgaaguugcccGCGaCCcAUGcCGCCGCc -3'
miRNA:   3'- -UCGU------CGCCCG----------UGC-GGuUACuGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 22677 0.67 0.451641
Target:  5'- cGCGGCaGGCA-GCCAAaagGcCGCCGa -3'
miRNA:   3'- uCGUCGcCCGUgCGGUUa--CuGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 45195 0.67 0.450681
Target:  5'- cGGCAGCGGuCGagaGCCugaacaaGAUGGCGCgGUc -3'
miRNA:   3'- -UCGUCGCCcGUg--CGG-------UUACUGCGgCG- -5'
12389 3' -59.5 NC_003324.1 + 30604 0.67 0.442086
Target:  5'- cGGCAGCGGcaGCGaagguCGCCAcgGuCGCagGCg -3'
miRNA:   3'- -UCGUCGCC--CGU-----GCGGUuaCuGCGg-CG- -5'
12389 3' -59.5 NC_003324.1 + 46331 0.67 0.442086
Target:  5'- cGCGGUGGGCucUGCC-GUGuCGuCCGUc -3'
miRNA:   3'- uCGUCGCCCGu-GCGGuUACuGC-GGCG- -5'
12389 3' -59.5 NC_003324.1 + 38014 0.67 0.442086
Target:  5'- uGCGGCgcacgGGGCGCGUCAAcauucCGCCGa -3'
miRNA:   3'- uCGUCG-----CCCGUGCGGUUacu--GCGGCg -5'
12389 3' -59.5 NC_003324.1 + 30762 0.67 0.442086
Target:  5'- aAGCA-CGGGCGCGguCCu---GCGCCGUa -3'
miRNA:   3'- -UCGUcGCCCGUGC--GGuuacUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 39001 0.67 0.441136
Target:  5'- cGCAGCGaGUGaGCCGGUGACGaucuucuCCGCc -3'
miRNA:   3'- uCGUCGCcCGUgCGGUUACUGC-------GGCG- -5'
12389 3' -59.5 NC_003324.1 + 14355 0.67 0.436407
Target:  5'- aAGC-GCGGGCcgACguauccacggcugcuGCCAAUcaacGCGCCGCa -3'
miRNA:   3'- -UCGuCGCCCG--UG---------------CGGUUAc---UGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 36430 0.67 0.432645
Target:  5'- uGCGGaucaugccguaGGGCAUGCCGuc-GCGcCCGCg -3'
miRNA:   3'- uCGUCg----------CCCGUGCGGUuacUGC-GGCG- -5'
12389 3' -59.5 NC_003324.1 + 44418 0.67 0.432645
Target:  5'- uGCuguGCGGGCaccggGCGCCGA-GACuucgGUCGCu -3'
miRNA:   3'- uCGu--CGCCCG-----UGCGGUUaCUG----CGGCG- -5'
12389 3' -59.5 NC_003324.1 + 11468 0.67 0.432645
Target:  5'- cGCAG-GGGCACauugcgGUCAAgaGCGCCGUc -3'
miRNA:   3'- uCGUCgCCCGUG------CGGUUacUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 5559 0.67 0.432645
Target:  5'- aAGCAGUcuugagcgugGGGCGgGC----GACGCCGCc -3'
miRNA:   3'- -UCGUCG----------CCCGUgCGguuaCUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 44415 0.67 0.429836
Target:  5'- cGCAGC--GCGCGCCG-UGGCugcagaggcuaucgGCCGCg -3'
miRNA:   3'- uCGUCGccCGUGCGGUuACUG--------------CGGCG- -5'
12389 3' -59.5 NC_003324.1 + 30361 0.67 0.423323
Target:  5'- cGGCGGCuuGGGCGaccgUGCCu-UGGC-CCGCa -3'
miRNA:   3'- -UCGUCG--CCCGU----GCGGuuACUGcGGCG- -5'
12389 3' -59.5 NC_003324.1 + 17769 0.67 0.423323
Target:  5'- cGCcaucaGGGCcaucAUGCCGGUGAUGCCGg -3'
miRNA:   3'- uCGucg--CCCG----UGCGGUUACUGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.