miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12389 3' -59.5 NC_003324.1 + 16142 0.71 0.25792
Target:  5'- cGGUAGCGGGggcCGCGCCAGgcauCGCUGg -3'
miRNA:   3'- -UCGUCGCCC---GUGCGGUUacu-GCGGCg -5'
12389 3' -59.5 NC_003324.1 + 17179 0.67 0.405046
Target:  5'- aGGC-GCuGGCGCGUCugucgGACGCgGCu -3'
miRNA:   3'- -UCGuCGcCCGUGCGGuua--CUGCGgCG- -5'
12389 3' -59.5 NC_003324.1 + 17598 0.66 0.461309
Target:  5'- cAGaUAGUGccccGGCGCGCCGuugagcacGAUGCCGCc -3'
miRNA:   3'- -UC-GUCGC----CCGUGCGGUua------CUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 17769 0.67 0.423323
Target:  5'- cGCcaucaGGGCcaucAUGCCGGUGAUGCCGg -3'
miRNA:   3'- uCGucg--CCCG----UGCGGUUACUGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 18129 0.7 0.291171
Target:  5'- cGCAGCGGcGUguauucgACGCCGGUuuCGCCGa -3'
miRNA:   3'- uCGUCGCC-CG-------UGCGGUUAcuGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 18817 0.66 0.461309
Target:  5'- cGCGGCGaaGGUcgGCGCCAGUcuccaucACGCCGg -3'
miRNA:   3'- uCGUCGC--CCG--UGCGGUUAc------UGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 19580 0.66 0.471085
Target:  5'- cGCGGCaagaaGCACGCC---GACGCCGa -3'
miRNA:   3'- uCGUCGcc---CGUGCGGuuaCUGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 19975 0.69 0.31389
Target:  5'- cGGCGGCGaaucGGCugGCuggagaauucuuCAAUGACcguaaaGCCGCa -3'
miRNA:   3'- -UCGUCGC----CCGugCG------------GUUACUG------CGGCG- -5'
12389 3' -59.5 NC_003324.1 + 20355 0.7 0.299083
Target:  5'- gAGCGGUGGcccGCugaGCCcguAUGACGCCGg -3'
miRNA:   3'- -UCGUCGCC---CGug-CGGu--UACUGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 20543 0.66 0.471085
Target:  5'- uGCGGCGaucgaGCGCGUucuCAAUGACgGCCGg -3'
miRNA:   3'- uCGUCGCc----CGUGCG---GUUACUG-CGGCg -5'
12389 3' -59.5 NC_003324.1 + 20581 0.66 0.461309
Target:  5'- uGGCgAGCGGGauccggUGCU-GUGGCGCCGUc -3'
miRNA:   3'- -UCG-UCGCCCgu----GCGGuUACUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 20590 0.69 0.306418
Target:  5'- cGGuCGGCGGGCACGCCcu---CGCucaauCGCa -3'
miRNA:   3'- -UC-GUCGCCCGUGCGGuuacuGCG-----GCG- -5'
12389 3' -59.5 NC_003324.1 + 21158 0.72 0.210379
Target:  5'- gAGCgAGCGGGCGCGCgacuugauaCGGUGcUGCuCGCg -3'
miRNA:   3'- -UCG-UCGCCCGUGCG---------GUUACuGCG-GCG- -5'
12389 3' -59.5 NC_003324.1 + 22261 0.68 0.378584
Target:  5'- cGCGGCGaGCuGCGCCu-UGAUGUCGUc -3'
miRNA:   3'- uCGUCGCcCG-UGCGGuuACUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 22677 0.67 0.451641
Target:  5'- cGCGGCaGGCA-GCCAAaagGcCGCCGa -3'
miRNA:   3'- uCGUCGcCCGUgCGGUUa--CuGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 23103 0.71 0.245266
Target:  5'- cGGCuuGCGGGCcUGuCCGAUG-CGUCGCu -3'
miRNA:   3'- -UCGu-CGCCCGuGC-GGUUACuGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 23233 0.73 0.184652
Target:  5'- uGguGCGGGCGCaacUCGAUGAUGUCGUc -3'
miRNA:   3'- uCguCGCCCGUGc--GGUUACUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 23552 0.75 0.137654
Target:  5'- uGGCGGCGGGCGCGCUc--GGCGaCgGUa -3'
miRNA:   3'- -UCGUCGCCCGUGCGGuuaCUGC-GgCG- -5'
12389 3' -59.5 NC_003324.1 + 24055 0.75 0.123471
Target:  5'- cGGCacuGGCGGGCuuuaccuucuCGCCGGUG-CGCUGCg -3'
miRNA:   3'- -UCG---UCGCCCGu---------GCGGUUACuGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 24187 0.68 0.353307
Target:  5'- gAGCAGaacuacgacaaGGGUaucaGCGCCAccGUGGCGCagCGCa -3'
miRNA:   3'- -UCGUCg----------CCCG----UGCGGU--UACUGCG--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.