miRNA display CGI


Results 1 - 20 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12389 3' -59.5 NC_003324.1 + 1532 0.68 0.396096
Target:  5'- cGGCAGUGGuGCGCGgCGcuAUGGCcCCGa -3'
miRNA:   3'- -UCGUCGCC-CGUGCgGU--UACUGcGGCg -5'
12389 3' -59.5 NC_003324.1 + 2357 0.71 0.251527
Target:  5'- cGCAG-GGGCGgGUCGcgGuCGCUGCg -3'
miRNA:   3'- uCGUCgCCCGUgCGGUuaCuGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 3222 0.66 0.50102
Target:  5'- gAGCucGCcaagGGGCGCGUCGAUcACGCCu- -3'
miRNA:   3'- -UCGu-CG----CCCGUGCGGUUAcUGCGGcg -5'
12389 3' -59.5 NC_003324.1 + 3610 0.67 0.423323
Target:  5'- uGCAGCcGGUucCGCUcccAUGACGCCGa -3'
miRNA:   3'- uCGUCGcCCGu-GCGGu--UACUGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 3639 0.67 0.414123
Target:  5'- uGCauGGCGGGCGCcaCCGAa-GCGCCGUu -3'
miRNA:   3'- uCG--UCGCCCGUGc-GGUUacUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 4599 0.7 0.264444
Target:  5'- cGGCc-CGGGauccgaagaACGCCAacAUGAUGCCGCu -3'
miRNA:   3'- -UCGucGCCCg--------UGCGGU--UACUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 5184 0.69 0.329247
Target:  5'- aGGaaaaAGCGGcGCAgauCGUCGAUcGCGCCGCu -3'
miRNA:   3'- -UCg---UCGCC-CGU---GCGGUUAcUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 5391 0.66 0.490945
Target:  5'- gAGCGGCGauuucGGCuCGgaaGAUGGCGcCCGCa -3'
miRNA:   3'- -UCGUCGC-----CCGuGCgg-UUACUGC-GGCG- -5'
12389 3' -59.5 NC_003324.1 + 5486 0.75 0.133974
Target:  5'- cAGguGCGGGCGCcaucuuccgaGCCGAaauCGCCGCu -3'
miRNA:   3'- -UCguCGCCCGUG----------CGGUUacuGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 5559 0.67 0.432645
Target:  5'- aAGCAGUcuugagcgugGGGCGgGC----GACGCCGCc -3'
miRNA:   3'- -UCGUCG----------CCCGUgCGguuaCUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 5667 0.67 0.423323
Target:  5'- cGGUGGaaacgaucaCGGuCAgGCCGAUGACGcCCGCg -3'
miRNA:   3'- -UCGUC---------GCCcGUgCGGUUACUGC-GGCG- -5'
12389 3' -59.5 NC_003324.1 + 7332 0.66 0.461309
Target:  5'- cGCGcGCcgaGGGCACGCUGAcGAUGCgGUu -3'
miRNA:   3'- uCGU-CG---CCCGUGCGGUUaCUGCGgCG- -5'
12389 3' -59.5 NC_003324.1 + 7658 0.67 0.414123
Target:  5'- cGGCAGUGccGGCugGCguuuauGUGuCGCUGCa -3'
miRNA:   3'- -UCGUCGC--CCGugCGgu----UACuGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 11468 0.67 0.432645
Target:  5'- cGCAG-GGGCACauugcgGUCAAgaGCGCCGUc -3'
miRNA:   3'- uCGUCgCCCGUG------CGGUUacUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 11556 0.68 0.378584
Target:  5'- cGGCcuuuGCGGGCGagcaGCCGAUGcuGCucCCGCg -3'
miRNA:   3'- -UCGu---CGCCCGUg---CGGUUAC--UGc-GGCG- -5'
12389 3' -59.5 NC_003324.1 + 13072 0.69 0.329247
Target:  5'- uGCAGCcGGUAccgcCGCCGccGAcCGCCGCc -3'
miRNA:   3'- uCGUCGcCCGU----GCGGUuaCU-GCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 13725 0.68 0.361598
Target:  5'- cGGCGGCaGGCAC-UgGAUGACGCgGg -3'
miRNA:   3'- -UCGUCGcCCGUGcGgUUACUGCGgCg -5'
12389 3' -59.5 NC_003324.1 + 14355 0.67 0.436407
Target:  5'- aAGC-GCGGGCcgACguauccacggcugcuGCCAAUcaacGCGCCGCa -3'
miRNA:   3'- -UCGuCGCCCG--UG---------------CGGUUAc---UGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 15224 0.68 0.361598
Target:  5'- cGGCGGCGaGCcuuuucacgugGCGCCGugucGACGCCGa -3'
miRNA:   3'- -UCGUCGCcCG-----------UGCGGUua--CUGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 15649 0.66 0.480965
Target:  5'- uGGCgacGGCcccGGCGCGCuCGAUGACGCg-- -3'
miRNA:   3'- -UCG---UCGc--CCGUGCG-GUUACUGCGgcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.