miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12389 3' -59.5 NC_003324.1 + 44913 1.1 0.000323
Target:  5'- cAGCAGCGGGCACGCCAAUGACGCCGCc -3'
miRNA:   3'- -UCGUCGCCCGUGCGGUUACUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 50212 0.81 0.049074
Target:  5'- --uGGCGGGCACGCUccaaaggcAUGGCGCCGCu -3'
miRNA:   3'- ucgUCGCCCGUGCGGu-------UACUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 24055 0.75 0.123471
Target:  5'- cGGCacuGGCGGGCuuuaccuucuCGCCGGUG-CGCUGCg -3'
miRNA:   3'- -UCG---UCGCCCGu---------GCGGUUACuGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 5486 0.75 0.133974
Target:  5'- cAGguGCGGGCGCcaucuuccgaGCCGAaauCGCCGCu -3'
miRNA:   3'- -UCguCGCCCGUG----------CGGUUacuGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 23552 0.75 0.137654
Target:  5'- uGGCGGCGGGCGCGCUc--GGCGaCgGUa -3'
miRNA:   3'- -UCGUCGCCCGUGCGGuuaCUGC-GgCG- -5'
12389 3' -59.5 NC_003324.1 + 42100 0.73 0.184167
Target:  5'- cAGCAGgGGccgggagcgcuucGCAcucguCGCCAAUGcCGCCGCg -3'
miRNA:   3'- -UCGUCgCC-------------CGU-----GCGGUUACuGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 23233 0.73 0.184652
Target:  5'- uGguGCGGGCGCaacUCGAUGAUGUCGUc -3'
miRNA:   3'- uCguCGCCCGUGc--GGUUACUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 21158 0.72 0.210379
Target:  5'- gAGCgAGCGGGCGCGCgacuugauaCGGUGcUGCuCGCg -3'
miRNA:   3'- -UCG-UCGCCCGUGCG---------GUUACuGCG-GCG- -5'
12389 3' -59.5 NC_003324.1 + 26804 0.72 0.215881
Target:  5'- cGCGGCcgugcgcuuGGCugGCUu-UGGCGCCGCu -3'
miRNA:   3'- uCGUCGc--------CCGugCGGuuACUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 38555 0.72 0.221507
Target:  5'- cGGCAGCuccgggcgauaGGGCACGCgcGUGAUGCgGUu -3'
miRNA:   3'- -UCGUCG-----------CCCGUGCGguUACUGCGgCG- -5'
12389 3' -59.5 NC_003324.1 + 42279 0.71 0.233132
Target:  5'- gGGC-GCGGGUcggcaACGCUGAguGCGCCGCc -3'
miRNA:   3'- -UCGuCGCCCG-----UGCGGUUacUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 23103 0.71 0.245266
Target:  5'- cGGCuuGCGGGCcUGuCCGAUG-CGUCGCu -3'
miRNA:   3'- -UCGu-CGCCCGuGC-GGUUACuGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 29480 0.71 0.251527
Target:  5'- uGGCuGCGGGCGCGUCg--GGCGCa-- -3'
miRNA:   3'- -UCGuCGCCCGUGCGGuuaCUGCGgcg -5'
12389 3' -59.5 NC_003324.1 + 32155 0.71 0.251527
Target:  5'- cGCAGCGaGGCcgaagaGCCAuuUGACGCCuuGCu -3'
miRNA:   3'- uCGUCGC-CCGug----CGGUu-ACUGCGG--CG- -5'
12389 3' -59.5 NC_003324.1 + 2357 0.71 0.251527
Target:  5'- cGCAG-GGGCGgGUCGcgGuCGCUGCg -3'
miRNA:   3'- uCGUCgCCCGUgCGGUuaCuGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 16142 0.71 0.25792
Target:  5'- cGGUAGCGGGggcCGCGCCAGgcauCGCUGg -3'
miRNA:   3'- -UCGUCGCCC---GUGCGGUUacu-GCGGCg -5'
12389 3' -59.5 NC_003324.1 + 4599 0.7 0.264444
Target:  5'- cGGCc-CGGGauccgaagaACGCCAacAUGAUGCCGCu -3'
miRNA:   3'- -UCGucGCCCg--------UGCGGU--UACUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 47657 0.7 0.264444
Target:  5'- gAGCuGU-GGCACGCCGGUG-CGCUGg -3'
miRNA:   3'- -UCGuCGcCCGUGCGGUUACuGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 49745 0.7 0.27043
Target:  5'- -uCAGCGGGCGCaCCAccaucacGUGgaACGCUGCa -3'
miRNA:   3'- ucGUCGCCCGUGcGGU-------UAC--UGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 47101 0.7 0.277894
Target:  5'- uGCGGCGaGGUGCGgCAAgucUGGCGaCUGCa -3'
miRNA:   3'- uCGUCGC-CCGUGCgGUU---ACUGC-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.