miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12389 3' -59.5 NC_003324.1 + 42997 0.66 0.511184
Target:  5'- cGCAGUGa-C-CGCCAAUGGucgcccCGCCGCu -3'
miRNA:   3'- uCGUCGCccGuGCGGUUACU------GCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 49320 0.66 0.511184
Target:  5'- gGGCccguCGGGC-UGCCcgaucAUGGCGUCGCa -3'
miRNA:   3'- -UCGuc--GCCCGuGCGGu----UACUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 51513 0.66 0.511184
Target:  5'- cAGCAGCGuucucgcGCAC-CCAAauccgGuCGCCGCg -3'
miRNA:   3'- -UCGUCGCc------CGUGcGGUUa----CuGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 3222 0.66 0.50102
Target:  5'- gAGCucGCcaagGGGCGCGUCGAUcACGCCu- -3'
miRNA:   3'- -UCGu-CG----CCCGUGCGGUUAcUGCGGcg -5'
12389 3' -59.5 NC_003324.1 + 28508 0.66 0.50102
Target:  5'- uGGCAacGCGGGCGCccuucggaccgaGaCCAcUGAggccUGCCGCg -3'
miRNA:   3'- -UCGU--CGCCCGUG------------C-GGUuACU----GCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 24289 0.66 0.50102
Target:  5'- gGGCacGGCGGaGCuuGgCGAaGGCGUCGCg -3'
miRNA:   3'- -UCG--UCGCC-CGugCgGUUaCUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 5391 0.66 0.490945
Target:  5'- gAGCGGCGauuucGGCuCGgaaGAUGGCGcCCGCa -3'
miRNA:   3'- -UCGUCGC-----CCGuGCgg-UUACUGC-GGCG- -5'
12389 3' -59.5 NC_003324.1 + 44884 0.66 0.490945
Target:  5'- aAGuCAGC-GGUACGCCGG-GGCGCgGg -3'
miRNA:   3'- -UC-GUCGcCCGUGCGGUUaCUGCGgCg -5'
12389 3' -59.5 NC_003324.1 + 30806 0.66 0.490945
Target:  5'- gAGCAGCaGGCG-GCC---GACGCCa- -3'
miRNA:   3'- -UCGUCGcCCGUgCGGuuaCUGCGGcg -5'
12389 3' -59.5 NC_003324.1 + 47198 0.66 0.480965
Target:  5'- aGGgGGUGGuGCAguCGCCAGacuUGCCGCa -3'
miRNA:   3'- -UCgUCGCC-CGU--GCGGUUacuGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 31322 0.66 0.480965
Target:  5'- cGCAGUGcGGCcgGCGgCGcUGGCGCUGg -3'
miRNA:   3'- uCGUCGC-CCG--UGCgGUuACUGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 15649 0.66 0.480965
Target:  5'- uGGCgacGGCcccGGCGCGCuCGAUGACGCg-- -3'
miRNA:   3'- -UCG---UCGc--CCGUGCG-GUUACUGCGgcg -5'
12389 3' -59.5 NC_003324.1 + 49092 0.66 0.480965
Target:  5'- aAGCGGCGucuauuuCGCuGCCGGUGACGCgauCGCc -3'
miRNA:   3'- -UCGUCGCcc-----GUG-CGGUUACUGCG---GCG- -5'
12389 3' -59.5 NC_003324.1 + 44313 0.66 0.475025
Target:  5'- cGCGGUGGcGCG-GCCGAUagccucugcagccacGGCGCgCGCu -3'
miRNA:   3'- uCGUCGCC-CGUgCGGUUA---------------CUGCG-GCG- -5'
12389 3' -59.5 NC_003324.1 + 20543 0.66 0.471085
Target:  5'- uGCGGCGaucgaGCGCGUucuCAAUGACgGCCGg -3'
miRNA:   3'- uCGUCGCc----CGUGCG---GUUACUG-CGGCg -5'
12389 3' -59.5 NC_003324.1 + 19580 0.66 0.471085
Target:  5'- cGCGGCaagaaGCACGCC---GACGCCGa -3'
miRNA:   3'- uCGUCGcc---CGUGCGGuuaCUGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 20581 0.66 0.461309
Target:  5'- uGGCgAGCGGGauccggUGCU-GUGGCGCCGUc -3'
miRNA:   3'- -UCG-UCGCCCgu----GCGGuUACUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 18817 0.66 0.461309
Target:  5'- cGCGGCGaaGGUcgGCGCCAGUcuccaucACGCCGg -3'
miRNA:   3'- uCGUCGC--CCG--UGCGGUUAc------UGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 17598 0.66 0.461309
Target:  5'- cAGaUAGUGccccGGCGCGCCGuugagcacGAUGCCGCc -3'
miRNA:   3'- -UC-GUCGC----CCGUGCGGUua------CUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 7332 0.66 0.461309
Target:  5'- cGCGcGCcgaGGGCACGCUGAcGAUGCgGUu -3'
miRNA:   3'- uCGU-CG---CCCGUGCGGUUaCUGCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.