miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12389 3' -59.5 NC_003324.1 + 18129 0.7 0.291171
Target:  5'- cGCAGCGGcGUguauucgACGCCGGUuuCGCCGa -3'
miRNA:   3'- uCGUCGCC-CG-------UGCGGUUAcuGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 32818 0.7 0.296908
Target:  5'- cGGCgcauGGCGGGCAgccgccucgaucauCGCCAcUGACG-CGCc -3'
miRNA:   3'- -UCG----UCGCCCGU--------------GCGGUuACUGCgGCG- -5'
12389 3' -59.5 NC_003324.1 + 20355 0.7 0.299083
Target:  5'- gAGCGGUGGcccGCugaGCCcguAUGACGCCGg -3'
miRNA:   3'- -UCGUCGCC---CGug-CGGu--UACUGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 48737 0.7 0.299083
Target:  5'- cAGcCAGCGucuccuGGCucAUGCCGAUGAUGuuGCg -3'
miRNA:   3'- -UC-GUCGC------CCG--UGCGGUUACUGCggCG- -5'
12389 3' -59.5 NC_003324.1 + 53968 0.7 0.299083
Target:  5'- uGCGGCgGGGCGCaCCAGgaccccauuguuUGuuGCCGCg -3'
miRNA:   3'- uCGUCG-CCCGUGcGGUU------------ACugCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 20590 0.69 0.306418
Target:  5'- cGGuCGGCGGGCACGCCcu---CGCucaauCGCa -3'
miRNA:   3'- -UC-GUCGCCCGUGCGGuuacuGCG-----GCG- -5'
12389 3' -59.5 NC_003324.1 + 36378 0.69 0.31389
Target:  5'- uGCAGCGccuuagauGCGCGCUuguUGAUGUCGCu -3'
miRNA:   3'- uCGUCGCc-------CGUGCGGuu-ACUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 19975 0.69 0.31389
Target:  5'- cGGCGGCGaaucGGCugGCuggagaauucuuCAAUGACcguaaaGCCGCa -3'
miRNA:   3'- -UCGUCGC----CCGugCG------------GUUACUG------CGGCG- -5'
12389 3' -59.5 NC_003324.1 + 28754 0.69 0.3215
Target:  5'- gGGCAGCgucuaccaGGuGCAUGCCGAUGGCaCCa- -3'
miRNA:   3'- -UCGUCG--------CC-CGUGCGGUUACUGcGGcg -5'
12389 3' -59.5 NC_003324.1 + 13072 0.69 0.329247
Target:  5'- uGCAGCcGGUAccgcCGCCGccGAcCGCCGCc -3'
miRNA:   3'- uCGUCGcCCGU----GCGGUuaCU-GCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 5184 0.69 0.329247
Target:  5'- aGGaaaaAGCGGcGCAgauCGUCGAUcGCGCCGCu -3'
miRNA:   3'- -UCg---UCGCC-CGU---GCGGUUAcUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 28676 0.69 0.340322
Target:  5'- cGaCAGCGGGCGgaagccgcgaacCGCCAaaacggucuaugucgAUGcuaACGCCGCc -3'
miRNA:   3'- uC-GUCGCCCGU------------GCGGU---------------UAC---UGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 32092 0.69 0.34515
Target:  5'- cGCuGCGccucGGCucguCGCCGGUGAgGCCGa -3'
miRNA:   3'- uCGuCGC----CCGu---GCGGUUACUgCGGCg -5'
12389 3' -59.5 NC_003324.1 + 40066 0.69 0.34515
Target:  5'- uGC-GCGGGuCugGCCGGaacgcGGCGCCGa -3'
miRNA:   3'- uCGuCGCCC-GugCGGUUa----CUGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 35568 0.69 0.34515
Target:  5'- aAGCAGCcGGUACGgCGAU--CGCCGUc -3'
miRNA:   3'- -UCGUCGcCCGUGCgGUUAcuGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 24187 0.68 0.353307
Target:  5'- gAGCAGaacuacgacaaGGGUaucaGCGCCAccGUGGCGCagCGCa -3'
miRNA:   3'- -UCGUCg----------CCCG----UGCGGU--UACUGCG--GCG- -5'
12389 3' -59.5 NC_003324.1 + 45891 0.68 0.353307
Target:  5'- -uCAuCGGGCACGCUccucauucGGCGCCGCc -3'
miRNA:   3'- ucGUcGCCCGUGCGGuua-----CUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 13725 0.68 0.361598
Target:  5'- cGGCGGCaGGCAC-UgGAUGACGCgGg -3'
miRNA:   3'- -UCGUCGcCCGUGcGgUUACUGCGgCg -5'
12389 3' -59.5 NC_003324.1 + 15224 0.68 0.361598
Target:  5'- cGGCGGCGaGCcuuuucacgugGCGCCGugucGACGCCGa -3'
miRNA:   3'- -UCGUCGCcCG-----------UGCGGUua--CUGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 35127 0.68 0.370024
Target:  5'- cGGCAGCGacgacgaucaGGC-CGCUGcUGcCGCCGCc -3'
miRNA:   3'- -UCGUCGC----------CCGuGCGGUuACuGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.