miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12389 5' -54.9 NC_003324.1 + 17200 0.66 0.758213
Target:  5'- aCGCGGCuuucGGCGUUCU--UGAGC-GCCg -3'
miRNA:   3'- gGCGUCG----UCGUAGGAgcACUCGaUGG- -5'
12389 5' -54.9 NC_003324.1 + 34990 0.66 0.7479
Target:  5'- uCCGagccuGCAGCGUUUgCGUuuGCUGCCg -3'
miRNA:   3'- -GGCgu---CGUCGUAGGaGCAcuCGAUGG- -5'
12389 5' -54.9 NC_003324.1 + 25294 0.66 0.746862
Target:  5'- aCCGuCAGuCGGCGcaggcaacuUCCUUggucucaugccugGUGAGCUGCg -3'
miRNA:   3'- -GGC-GUC-GUCGU---------AGGAG-------------CACUCGAUGg -5'
12389 5' -54.9 NC_003324.1 + 53293 0.66 0.737471
Target:  5'- uCCGCAGCuu--UCgUUGUGAagccggccgccaGCUACCa -3'
miRNA:   3'- -GGCGUCGucguAGgAGCACU------------CGAUGG- -5'
12389 5' -54.9 NC_003324.1 + 6976 0.66 0.737471
Target:  5'- aCCGCGGUGGCGaagagCUgauagUGUGAuGUUGCCu -3'
miRNA:   3'- -GGCGUCGUCGUa----GGa----GCACU-CGAUGG- -5'
12389 5' -54.9 NC_003324.1 + 41916 0.66 0.737471
Target:  5'- gUCGCAGUcgccGCAUCCg---GAGgUACCg -3'
miRNA:   3'- -GGCGUCGu---CGUAGGagcaCUCgAUGG- -5'
12389 5' -54.9 NC_003324.1 + 1851 0.66 0.726935
Target:  5'- gCUGCAGCAGCAgCUUCauucuGGCgGCCg -3'
miRNA:   3'- -GGCGUCGUCGUaGGAGcac--UCGaUGG- -5'
12389 5' -54.9 NC_003324.1 + 38648 0.66 0.726935
Target:  5'- aCCGCAucacGC-GCGUgCCcuaUCGcccgGAGCUGCCg -3'
miRNA:   3'- -GGCGU----CGuCGUA-GG---AGCa---CUCGAUGG- -5'
12389 5' -54.9 NC_003324.1 + 20309 0.66 0.726935
Target:  5'- cCCG-GGCuGCAuUCCaUC-UGGGCUGCCg -3'
miRNA:   3'- -GGCgUCGuCGU-AGG-AGcACUCGAUGG- -5'
12389 5' -54.9 NC_003324.1 + 45981 0.67 0.705593
Target:  5'- -aGCGGCGGCG-CCgaaUCGagGAGCgUGCCc -3'
miRNA:   3'- ggCGUCGUCGUaGG---AGCa-CUCG-AUGG- -5'
12389 5' -54.9 NC_003324.1 + 15752 0.67 0.705593
Target:  5'- cCUGaCGGUGGU---CUCGUGGGUUACCg -3'
miRNA:   3'- -GGC-GUCGUCGuagGAGCACUCGAUGG- -5'
12389 5' -54.9 NC_003324.1 + 44827 0.67 0.683965
Target:  5'- -gGgGGCGGCGUCauuggCGUGcccgcuGCUGCCg -3'
miRNA:   3'- ggCgUCGUCGUAGga---GCACu-----CGAUGG- -5'
12389 5' -54.9 NC_003324.1 + 21090 0.67 0.683965
Target:  5'- gCCGCGGC-GCGUgCUgCGUcGGCUuCCa -3'
miRNA:   3'- -GGCGUCGuCGUAgGA-GCAcUCGAuGG- -5'
12389 5' -54.9 NC_003324.1 + 4805 0.67 0.683965
Target:  5'- gCCGUAGCAGCcgCCUUcUGgauuuccagccAGCcGCCc -3'
miRNA:   3'- -GGCGUCGUCGuaGGAGcAC-----------UCGaUGG- -5'
12389 5' -54.9 NC_003324.1 + 21081 0.67 0.673071
Target:  5'- gCGCGGCcaucauugcGGCgAUCCgaCGUGAGCuUAUCg -3'
miRNA:   3'- gGCGUCG---------UCG-UAGGa-GCACUCG-AUGG- -5'
12389 5' -54.9 NC_003324.1 + 43131 0.67 0.671979
Target:  5'- cCCGCAGguuGcCGUCCUCGacggcgagcuuguUGAGCgagcGCCa -3'
miRNA:   3'- -GGCGUCgu-C-GUAGGAGC-------------ACUCGa---UGG- -5'
12389 5' -54.9 NC_003324.1 + 21851 0.67 0.662139
Target:  5'- gCGCAGCcgGGCcUCCUCGgcGGCcuugGCCu -3'
miRNA:   3'- gGCGUCG--UCGuAGGAGCacUCGa---UGG- -5'
12389 5' -54.9 NC_003324.1 + 13514 0.68 0.642398
Target:  5'- uCCGCGGCGGCGgugcacuggacaCCUCaGUcgccuguaucuggccGAGCUGCa -3'
miRNA:   3'- -GGCGUCGUCGUa-----------GGAG-CA---------------CUCGAUGg -5'
12389 5' -54.9 NC_003324.1 + 54316 0.68 0.629217
Target:  5'- aCCGguGCcGCGcCUUCGcuuUGAGCaGCCg -3'
miRNA:   3'- -GGCguCGuCGUaGGAGC---ACUCGaUGG- -5'
12389 5' -54.9 NC_003324.1 + 8163 0.68 0.629217
Target:  5'- aCCGUGGCAGCcauggucaccUCCUCGacgaAGUUGCCc -3'
miRNA:   3'- -GGCGUCGUCGu---------AGGAGCac--UCGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.