miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12399 5' -54.1 NC_003324.1 + 35353 0.66 0.738558
Target:  5'- -gGUUGCUGUuGuGcCUGGUCGGCCUg -3'
miRNA:   3'- caUAGCGGUAuC-CaGACCAGUCGGAg -5'
12399 5' -54.1 NC_003324.1 + 11149 0.66 0.72781
Target:  5'- --uUCGCC---GGUCUGG-CGGCCg- -3'
miRNA:   3'- cauAGCGGuauCCAGACCaGUCGGag -5'
12399 5' -54.1 NC_003324.1 + 32107 0.66 0.72781
Target:  5'- -cGUCGCCGgugAGGcCgagugccuUGGUCuccGCCUCg -3'
miRNA:   3'- caUAGCGGUa--UCCaG--------ACCAGu--CGGAG- -5'
12399 5' -54.1 NC_003324.1 + 45943 0.67 0.716963
Target:  5'- ---aCGCCGcAGG-CUGGaaAGCCUCc -3'
miRNA:   3'- cauaGCGGUaUCCaGACCagUCGGAG- -5'
12399 5' -54.1 NC_003324.1 + 20829 0.67 0.704931
Target:  5'- -cAUCGCCGUuccggucGGGUCcauGUCGGCCg- -3'
miRNA:   3'- caUAGCGGUA-------UCCAGac-CAGUCGGag -5'
12399 5' -54.1 NC_003324.1 + 45088 0.68 0.650467
Target:  5'- --cUCGCCGU---UCUGGUgCAGCUUCa -3'
miRNA:   3'- cauAGCGGUAuccAGACCA-GUCGGAG- -5'
12399 5' -54.1 NC_003324.1 + 25526 0.69 0.550173
Target:  5'- --cUCGCCAagUGGGUCggcugGGgCGGCCUg -3'
miRNA:   3'- cauAGCGGU--AUCCAGa----CCaGUCGGAg -5'
12399 5' -54.1 NC_003324.1 + 57243 0.7 0.53925
Target:  5'- --uUCGCCAaGGGUCgcaagcGGcCAGCCUg -3'
miRNA:   3'- cauAGCGGUaUCCAGa-----CCaGUCGGAg -5'
12399 5' -54.1 NC_003324.1 + 14345 0.71 0.479657
Target:  5'- cUAUCGgCuuGUAGGUCUuuucguagcggucgcGGUCAGCCUUc -3'
miRNA:   3'- cAUAGCgG--UAUCCAGA---------------CCAGUCGGAG- -5'
12399 5' -54.1 NC_003324.1 + 38576 0.78 0.178394
Target:  5'- aUAUCGCCAUcuGGUUUcaccaggcGGUCGGCCUCg -3'
miRNA:   3'- cAUAGCGGUAu-CCAGA--------CCAGUCGGAG- -5'
12399 5' -54.1 NC_003324.1 + 49676 1.1 0.000975
Target:  5'- gGUAUCGCCAUAGGUCUGGUCAGCCUCa -3'
miRNA:   3'- -CAUAGCGGUAUCCAGACCAGUCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.