Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12409 | 3' | -58.2 | NC_003324.1 | + | 53562 | 0.7 | 0.36464 |
Target: 5'- uCGAUcaGAaGAAgGCCGCCuGAUGCCGGUc -3' miRNA: 3'- -GCUA--CUaCUU-CGGCGG-CUGCGGCCGc -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 48821 | 0.7 | 0.35634 |
Target: 5'- uGAUGGccUGcAGCCuGCUGGCGCCGacGCGg -3' miRNA: 3'- gCUACU--ACuUCGG-CGGCUGCGGC--CGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 43237 | 0.7 | 0.340141 |
Target: 5'- aCGAUGuagGggGCCGCCugcaggguCGCCuGGCa -3' miRNA: 3'- -GCUACua-CuuCGGCGGcu------GCGG-CCGc -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 34427 | 0.7 | 0.340141 |
Target: 5'- uCGGUGAUGucGGCCGaCGgcacauuggcaaGCGUCGGCGg -3' miRNA: 3'- -GCUACUACu-UCGGCgGC------------UGCGGCCGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 38811 | 0.71 | 0.329901 |
Target: 5'- uCGAUGAUGAcGCCGUgCGGguccauggcguauuCGUCGGCGu -3' miRNA: 3'- -GCUACUACUuCGGCG-GCU--------------GCGGCCGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 35913 | 0.71 | 0.316857 |
Target: 5'- uCGAaucccUGAUGGAGCUGCUGGgcaaGCUGGCu -3' miRNA: 3'- -GCU-----ACUACUUCGGCGGCUg---CGGCCGc -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 35220 | 0.71 | 0.312346 |
Target: 5'- aGGUGAcGAAGgCGCugaggucaacggcgaCGGCGCUGGCGa -3' miRNA: 3'- gCUACUaCUUCgGCG---------------GCUGCGGCCGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 596 | 0.71 | 0.302012 |
Target: 5'- aGAUGGUcGAGCUGCCGACcUUGGUGa -3' miRNA: 3'- gCUACUAcUUCGGCGGCUGcGGCCGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 16041 | 0.72 | 0.280761 |
Target: 5'- uGGUGAUGAGGCCaaguUCGACgacuuGCCGGCc -3' miRNA: 3'- gCUACUACUUCGGc---GGCUG-----CGGCCGc -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 52399 | 0.72 | 0.280761 |
Target: 5'- aGAUGuagaccuugcUGggGUCGCaGACGCCGGCc -3' miRNA: 3'- gCUACu---------ACuuCGGCGgCUGCGGCCGc -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 39309 | 0.72 | 0.276656 |
Target: 5'- gGAUGAUGAucuggaucagugucgAGaaGCCG-CGCUGGCGa -3' miRNA: 3'- gCUACUACU---------------UCggCGGCuGCGGCCGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 29460 | 0.72 | 0.267264 |
Target: 5'- uCGAcGAUGAcacGGCCGCCuGGCuGCgGGCGc -3' miRNA: 3'- -GCUaCUACU---UCGGCGG-CUG-CGgCCGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 33461 | 0.72 | 0.260714 |
Target: 5'- cCGAauuuuAUGGAGCCGUCGACGCCGaacguaacaauGCGg -3' miRNA: 3'- -GCUac---UACUUCGGCGGCUGCGGC-----------CGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 53485 | 0.73 | 0.248008 |
Target: 5'- ---cGcgGAAGCCgagGCCGaAUGCCGGCGa -3' miRNA: 3'- gcuaCuaCUUCGG---CGGC-UGCGGCCGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 36708 | 0.73 | 0.229914 |
Target: 5'- uCGAUGAUGcGGaugCGCUGGCGCUGGUa -3' miRNA: 3'- -GCUACUACuUCg--GCGGCUGCGGCCGc -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 23763 | 0.73 | 0.224135 |
Target: 5'- uCGAUG-UGAAGCCcggcgcGCCGugGauaCCGGCGa -3' miRNA: 3'- -GCUACuACUUCGG------CGGCugC---GGCCGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 32560 | 0.74 | 0.202243 |
Target: 5'- -cGUGAUcgccGAGGCUGCCGGCGaaGGCGa -3' miRNA: 3'- gcUACUA----CUUCGGCGGCUGCggCCGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 22825 | 0.79 | 0.098028 |
Target: 5'- aGAUGGaaAGGCUGCuCGACGCCGGCa -3' miRNA: 3'- gCUACUacUUCGGCG-GCUGCGGCCGc -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 14900 | 0.83 | 0.0487 |
Target: 5'- cCGAUGccgcccagGAAGCUGCCGAUGCCGGCc -3' miRNA: 3'- -GCUACua------CUUCGGCGGCUGCGGCCGc -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 25592 | 0.83 | 0.0487 |
Target: 5'- gCGGUGAUGAcauagucugucGGCCGCUGcuGCGCCGGCa -3' miRNA: 3'- -GCUACUACU-----------UCGGCGGC--UGCGGCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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