miRNA display CGI


Results 21 - 40 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12409 3' -58.2 NC_003324.1 + 33461 0.72 0.260714
Target:  5'- cCGAauuuuAUGGAGCCGUCGACGCCGaacguaacaauGCGg -3'
miRNA:   3'- -GCUac---UACUUCGGCGGCUGCGGC-----------CGC- -5'
12409 3' -58.2 NC_003324.1 + 34427 0.7 0.340141
Target:  5'- uCGGUGAUGucGGCCGaCGgcacauuggcaaGCGUCGGCGg -3'
miRNA:   3'- -GCUACUACu-UCGGCgGC------------UGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 35220 0.71 0.312346
Target:  5'- aGGUGAcGAAGgCGCugaggucaacggcgaCGGCGCUGGCGa -3'
miRNA:   3'- gCUACUaCUUCgGCG---------------GCUGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 35913 0.71 0.316857
Target:  5'- uCGAaucccUGAUGGAGCUGCUGGgcaaGCUGGCu -3'
miRNA:   3'- -GCU-----ACUACUUCGGCGGCUg---CGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 36708 0.73 0.229914
Target:  5'- uCGAUGAUGcGGaugCGCUGGCGCUGGUa -3'
miRNA:   3'- -GCUACUACuUCg--GCGGCUGCGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 38087 0.69 0.399156
Target:  5'- --cUGgcGAAGCgCGUCGGCGCCGuGCu -3'
miRNA:   3'- gcuACuaCUUCG-GCGGCUGCGGC-CGc -5'
12409 3' -58.2 NC_003324.1 + 38811 0.71 0.329901
Target:  5'- uCGAUGAUGAcGCCGUgCGGguccauggcguauuCGUCGGCGu -3'
miRNA:   3'- -GCUACUACUuCGGCG-GCU--------------GCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 39267 0.66 0.576458
Target:  5'- -uAUGAUcGGuuGCCGCCGugGCUGcGCc -3'
miRNA:   3'- gcUACUA-CUu-CGGCGGCugCGGC-CGc -5'
12409 3' -58.2 NC_003324.1 + 39309 0.72 0.276656
Target:  5'- gGAUGAUGAucuggaucagugucgAGaaGCCG-CGCUGGCGa -3'
miRNA:   3'- gCUACUACU---------------UCggCGGCuGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 42294 0.66 0.565916
Target:  5'- aCGcUGAgugcGCCGCCugccacgugccgGGCGCCGGUGa -3'
miRNA:   3'- -GCuACUacuuCGGCGG------------CUGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 43237 0.7 0.340141
Target:  5'- aCGAUGuagGggGCCGCCugcaggguCGCCuGGCa -3'
miRNA:   3'- -GCUACua-CuuCGGCGGcu------GCGG-CCGc -5'
12409 3' -58.2 NC_003324.1 + 47711 0.69 0.435692
Target:  5'- aCGAUGgcGGcccGGUCGCCGucAUGCgCGGCGu -3'
miRNA:   3'- -GCUACuaCU---UCGGCGGC--UGCG-GCCGC- -5'
12409 3' -58.2 NC_003324.1 + 47771 0.68 0.478018
Target:  5'- uCGAgGAggccgcGAAGCgCGCCGACGgaacuguccagcgcaCCGGCGu -3'
miRNA:   3'- -GCUaCUa-----CUUCG-GCGGCUGC---------------GGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 48714 0.69 0.399156
Target:  5'- cCGAUGAUGuugcGGCggaGCCgGAUGCgGGCGc -3'
miRNA:   3'- -GCUACUACu---UCGg--CGG-CUGCGgCCGC- -5'
12409 3' -58.2 NC_003324.1 + 48821 0.7 0.35634
Target:  5'- uGAUGGccUGcAGCCuGCUGGCGCCGacGCGg -3'
miRNA:   3'- gCUACU--ACuUCGG-CGGCUGCGGC--CGC- -5'
12409 3' -58.2 NC_003324.1 + 50275 0.67 0.544991
Target:  5'- aGaAUGAUGc-GCCGCCGGuCGaCGGCa -3'
miRNA:   3'- gC-UACUACuuCGGCGGCU-GCgGCCGc -5'
12409 3' -58.2 NC_003324.1 + 50375 0.69 0.426376
Target:  5'- -uAUGGUGAAcGCCuucuuGCCGuCGaCCGGCGg -3'
miRNA:   3'- gcUACUACUU-CGG-----CGGCuGC-GGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 52296 0.67 0.5141
Target:  5'- cCGAUuc-GggGCgGCCGGCGUCuGCGa -3'
miRNA:   3'- -GCUAcuaCuuCGgCGGCUGCGGcCGC- -5'
12409 3' -58.2 NC_003324.1 + 52399 0.72 0.280761
Target:  5'- aGAUGuagaccuugcUGggGUCGCaGACGCCGGCc -3'
miRNA:   3'- gCUACu---------ACuuCGGCGgCUGCGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 53485 0.73 0.248008
Target:  5'- ---cGcgGAAGCCgagGCCGaAUGCCGGCGa -3'
miRNA:   3'- gcuaCuaCUUCGG---CGGC-UGCGGCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.