miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12409 3' -58.2 NC_003324.1 + 596 0.71 0.302012
Target:  5'- aGAUGGUcGAGCUGCCGACcUUGGUGa -3'
miRNA:   3'- gCUACUAcUUCGGCGGCUGcGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 2421 1.09 0.000571
Target:  5'- cCGAUGAUGAAGCCGCCGACGCCGGCGg -3'
miRNA:   3'- -GCUACUACUUCGGCGGCUGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 2519 0.88 0.022539
Target:  5'- uGGUGggGAacaAGCCGCCGGCGUCGGCGg -3'
miRNA:   3'- gCUACuaCU---UCGGCGGCUGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 4493 0.68 0.464324
Target:  5'- ---cGAUGAAGUcuuCGuuGAUGCCGcGCGa -3'
miRNA:   3'- gcuaCUACUUCG---GCggCUGCGGC-CGC- -5'
12409 3' -58.2 NC_003324.1 + 14420 0.66 0.576458
Target:  5'- uCGAUGggGAucacgcccGGCucuggCGCCcAUGCCGGCGu -3'
miRNA:   3'- -GCUACuaCU--------UCG-----GCGGcUGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 14549 0.67 0.50396
Target:  5'- gCGAcGGUGccagcaAGGuCCGCCGAugcuuggaCGCCGGCa -3'
miRNA:   3'- -GCUaCUAC------UUC-GGCGGCU--------GCGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 14900 0.83 0.0487
Target:  5'- cCGAUGccgcccagGAAGCUGCCGAUGCCGGCc -3'
miRNA:   3'- -GCUACua------CUUCGGCGGCUGCGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 16041 0.72 0.280761
Target:  5'- uGGUGAUGAGGCCaaguUCGACgacuuGCCGGCc -3'
miRNA:   3'- gCUACUACUUCGGc---GGCUG-----CGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 18848 0.66 0.597663
Target:  5'- aGAUcGA-GGAGCUGCuCGugGgcuCCGGCGu -3'
miRNA:   3'- gCUA-CUaCUUCGGCG-GCugC---GGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 19581 0.7 0.373074
Target:  5'- cCGcgGcaaGAAGCaCGCCGACGCCGaCGc -3'
miRNA:   3'- -GCuaCua-CUUCG-GCGGCUGCGGCcGC- -5'
12409 3' -58.2 NC_003324.1 + 20353 0.68 0.483948
Target:  5'- gCGGUGGcccgcUGAGcCCGUaUGACGCCGGCu -3'
miRNA:   3'- -GCUACU-----ACUUcGGCG-GCUGCGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 22202 0.67 0.542912
Target:  5'- aCGGUGAUGuuggugggcuuGCCGCCG-CGCaccuucgggagCGGCa -3'
miRNA:   3'- -GCUACUACuu---------CGGCGGCuGCG-----------GCCGc -5'
12409 3' -58.2 NC_003324.1 + 22469 0.66 0.608311
Target:  5'- aGGUGGUGAcggauugggAGCUGUCGcCGUCGGg- -3'
miRNA:   3'- gCUACUACU---------UCGGCGGCuGCGGCCgc -5'
12409 3' -58.2 NC_003324.1 + 22825 0.79 0.098028
Target:  5'- aGAUGGaaAGGCUGCuCGACGCCGGCa -3'
miRNA:   3'- gCUACUacUUCGGCG-GCUGCGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 23763 0.73 0.224135
Target:  5'- uCGAUG-UGAAGCCcggcgcGCCGugGauaCCGGCGa -3'
miRNA:   3'- -GCUACuACUUCGG------CGGCugC---GGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 23871 0.66 0.608311
Target:  5'- ---aGAaGAAGCuCGCCGAgGCCGaacGCGc -3'
miRNA:   3'- gcuaCUaCUUCG-GCGGCUgCGGC---CGC- -5'
12409 3' -58.2 NC_003324.1 + 25592 0.83 0.0487
Target:  5'- gCGGUGAUGAcauagucugucGGCCGCUGcuGCGCCGGCa -3'
miRNA:   3'- -GCUACUACU-----------UCGGCGGC--UGCGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 29460 0.72 0.267264
Target:  5'- uCGAcGAUGAcacGGCCGCCuGGCuGCgGGCGc -3'
miRNA:   3'- -GCUaCUACU---UCGGCGG-CUG-CGgCCGC- -5'
12409 3' -58.2 NC_003324.1 + 31319 0.7 0.373074
Target:  5'- ----aGUGcGGCCGgCGGCGCUGGCGc -3'
miRNA:   3'- gcuacUACuUCGGCgGCUGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 32560 0.74 0.202243
Target:  5'- -cGUGAUcgccGAGGCUGCCGGCGaaGGCGa -3'
miRNA:   3'- gcUACUA----CUUCGGCGGCUGCggCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.