miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12409 3' -58.2 NC_003324.1 + 2421 1.09 0.000571
Target:  5'- cCGAUGAUGAAGCCGCCGACGCCGGCGg -3'
miRNA:   3'- -GCUACUACUUCGGCGGCUGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 14420 0.66 0.576458
Target:  5'- uCGAUGggGAucacgcccGGCucuggCGCCcAUGCCGGCGu -3'
miRNA:   3'- -GCUACuaCU--------UCG-----GCGGcUGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 42294 0.66 0.565916
Target:  5'- aCGcUGAgugcGCCGCCugccacgugccgGGCGCCGGUGa -3'
miRNA:   3'- -GCuACUacuuCGGCGG------------CUGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 50275 0.67 0.544991
Target:  5'- aGaAUGAUGc-GCCGCCGGuCGaCGGCa -3'
miRNA:   3'- gC-UACUACuuCGGCGGCU-GCgGCCGc -5'
12409 3' -58.2 NC_003324.1 + 22202 0.67 0.542912
Target:  5'- aCGGUGAUGuuggugggcuuGCCGCCG-CGCaccuucgggagCGGCa -3'
miRNA:   3'- -GCUACUACuu---------CGGCGGCuGCG-----------GCCGc -5'
12409 3' -58.2 NC_003324.1 + 52296 0.67 0.5141
Target:  5'- cCGAUuc-GggGCgGCCGGCGUCuGCGa -3'
miRNA:   3'- -GCUAcuaCuuCGgCGGCUGCGGcCGC- -5'
12409 3' -58.2 NC_003324.1 + 38087 0.69 0.399156
Target:  5'- --cUGgcGAAGCgCGUCGGCGCCGuGCu -3'
miRNA:   3'- gcuACuaCUUCG-GCGGCUGCGGC-CGc -5'
12409 3' -58.2 NC_003324.1 + 53562 0.7 0.36464
Target:  5'- uCGAUcaGAaGAAgGCCGCCuGAUGCCGGUc -3'
miRNA:   3'- -GCUA--CUaCUU-CGGCGG-CUGCGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 43237 0.7 0.340141
Target:  5'- aCGAUGuagGggGCCGCCugcaggguCGCCuGGCa -3'
miRNA:   3'- -GCUACua-CuuCGGCGGcu------GCGG-CCGc -5'
12409 3' -58.2 NC_003324.1 + 34427 0.7 0.340141
Target:  5'- uCGGUGAUGucGGCCGaCGgcacauuggcaaGCGUCGGCGg -3'
miRNA:   3'- -GCUACUACu-UCGGCgGC------------UGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 38811 0.71 0.329901
Target:  5'- uCGAUGAUGAcGCCGUgCGGguccauggcguauuCGUCGGCGu -3'
miRNA:   3'- -GCUACUACUuCGGCG-GCU--------------GCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 25592 0.83 0.0487
Target:  5'- gCGGUGAUGAcauagucugucGGCCGCUGcuGCGCCGGCa -3'
miRNA:   3'- -GCUACUACU-----------UCGGCGGC--UGCGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 36708 0.73 0.229914
Target:  5'- uCGAUGAUGcGGaugCGCUGGCGCUGGUa -3'
miRNA:   3'- -GCUACUACuUCg--GCGGCUGCGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 53485 0.73 0.248008
Target:  5'- ---cGcgGAAGCCgagGCCGaAUGCCGGCGa -3'
miRNA:   3'- gcuaCuaCUUCGG---CGGC-UGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 33461 0.72 0.260714
Target:  5'- cCGAauuuuAUGGAGCCGUCGACGCCGaacguaacaauGCGg -3'
miRNA:   3'- -GCUac---UACUUCGGCGGCUGCGGC-----------CGC- -5'
12409 3' -58.2 NC_003324.1 + 29460 0.72 0.267264
Target:  5'- uCGAcGAUGAcacGGCCGCCuGGCuGCgGGCGc -3'
miRNA:   3'- -GCUaCUACU---UCGGCGG-CUG-CGgCCGC- -5'
12409 3' -58.2 NC_003324.1 + 39309 0.72 0.276656
Target:  5'- gGAUGAUGAucuggaucagugucgAGaaGCCG-CGCUGGCGa -3'
miRNA:   3'- gCUACUACU---------------UCggCGGCuGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 16041 0.72 0.280761
Target:  5'- uGGUGAUGAGGCCaaguUCGACgacuuGCCGGCc -3'
miRNA:   3'- gCUACUACUUCGGc---GGCUG-----CGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 2519 0.88 0.022539
Target:  5'- uGGUGggGAacaAGCCGCCGGCGUCGGCGg -3'
miRNA:   3'- gCUACuaCU---UCGGCGGCUGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 23871 0.66 0.608311
Target:  5'- ---aGAaGAAGCuCGCCGAgGCCGaacGCGc -3'
miRNA:   3'- gcuaCUaCUUCG-GCGGCUgCGGC---CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.