miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12409 3' -58.2 NC_003324.1 + 2421 1.09 0.000571
Target:  5'- cCGAUGAUGAAGCCGCCGACGCCGGCGg -3'
miRNA:   3'- -GCUACUACUUCGGCGGCUGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 2519 0.88 0.022539
Target:  5'- uGGUGggGAacaAGCCGCCGGCGUCGGCGg -3'
miRNA:   3'- gCUACuaCU---UCGGCGGCUGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 25592 0.83 0.0487
Target:  5'- gCGGUGAUGAcauagucugucGGCCGCUGcuGCGCCGGCa -3'
miRNA:   3'- -GCUACUACU-----------UCGGCGGC--UGCGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 14900 0.83 0.0487
Target:  5'- cCGAUGccgcccagGAAGCUGCCGAUGCCGGCc -3'
miRNA:   3'- -GCUACua------CUUCGGCGGCUGCGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 22825 0.79 0.098028
Target:  5'- aGAUGGaaAGGCUGCuCGACGCCGGCa -3'
miRNA:   3'- gCUACUacUUCGGCG-GCUGCGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 32560 0.74 0.202243
Target:  5'- -cGUGAUcgccGAGGCUGCCGGCGaaGGCGa -3'
miRNA:   3'- gcUACUA----CUUCGGCGGCUGCggCCGC- -5'
12409 3' -58.2 NC_003324.1 + 23763 0.73 0.224135
Target:  5'- uCGAUG-UGAAGCCcggcgcGCCGugGauaCCGGCGa -3'
miRNA:   3'- -GCUACuACUUCGG------CGGCugC---GGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 36708 0.73 0.229914
Target:  5'- uCGAUGAUGcGGaugCGCUGGCGCUGGUa -3'
miRNA:   3'- -GCUACUACuUCg--GCGGCUGCGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 53485 0.73 0.248008
Target:  5'- ---cGcgGAAGCCgagGCCGaAUGCCGGCGa -3'
miRNA:   3'- gcuaCuaCUUCGG---CGGC-UGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 33461 0.72 0.260714
Target:  5'- cCGAauuuuAUGGAGCCGUCGACGCCGaacguaacaauGCGg -3'
miRNA:   3'- -GCUac---UACUUCGGCGGCUGCGGC-----------CGC- -5'
12409 3' -58.2 NC_003324.1 + 29460 0.72 0.267264
Target:  5'- uCGAcGAUGAcacGGCCGCCuGGCuGCgGGCGc -3'
miRNA:   3'- -GCUaCUACU---UCGGCGG-CUG-CGgCCGC- -5'
12409 3' -58.2 NC_003324.1 + 39309 0.72 0.276656
Target:  5'- gGAUGAUGAucuggaucagugucgAGaaGCCG-CGCUGGCGa -3'
miRNA:   3'- gCUACUACU---------------UCggCGGCuGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 16041 0.72 0.280761
Target:  5'- uGGUGAUGAGGCCaaguUCGACgacuuGCCGGCc -3'
miRNA:   3'- gCUACUACUUCGGc---GGCUG-----CGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 52399 0.72 0.280761
Target:  5'- aGAUGuagaccuugcUGggGUCGCaGACGCCGGCc -3'
miRNA:   3'- gCUACu---------ACuuCGGCGgCUGCGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 596 0.71 0.302012
Target:  5'- aGAUGGUcGAGCUGCCGACcUUGGUGa -3'
miRNA:   3'- gCUACUAcUUCGGCGGCUGcGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 35220 0.71 0.312346
Target:  5'- aGGUGAcGAAGgCGCugaggucaacggcgaCGGCGCUGGCGa -3'
miRNA:   3'- gCUACUaCUUCgGCG---------------GCUGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 35913 0.71 0.316857
Target:  5'- uCGAaucccUGAUGGAGCUGCUGGgcaaGCUGGCu -3'
miRNA:   3'- -GCU-----ACUACUUCGGCGGCUg---CGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 38811 0.71 0.329901
Target:  5'- uCGAUGAUGAcGCCGUgCGGguccauggcguauuCGUCGGCGu -3'
miRNA:   3'- -GCUACUACUuCGGCG-GCU--------------GCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 34427 0.7 0.340141
Target:  5'- uCGGUGAUGucGGCCGaCGgcacauuggcaaGCGUCGGCGg -3'
miRNA:   3'- -GCUACUACu-UCGGCgGC------------UGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 43237 0.7 0.340141
Target:  5'- aCGAUGuagGggGCCGCCugcaggguCGCCuGGCa -3'
miRNA:   3'- -GCUACua-CuuCGGCGGcu------GCGG-CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.