miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12409 3' -58.2 NC_003324.1 + 56298 0.66 0.576458
Target:  5'- ---gGAUGucGCCGCCGAUcgaGCgauaGGCGa -3'
miRNA:   3'- gcuaCUACuuCGGCGGCUG---CGg---CCGC- -5'
12409 3' -58.2 NC_003324.1 + 35220 0.71 0.312346
Target:  5'- aGGUGAcGAAGgCGCugaggucaacggcgaCGGCGCUGGCGa -3'
miRNA:   3'- gCUACUaCUUCgGCG---------------GCUGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 23763 0.73 0.224135
Target:  5'- uCGAUG-UGAAGCCcggcgcGCCGugGauaCCGGCGa -3'
miRNA:   3'- -GCUACuACUUCGG------CGGCugC---GGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 2519 0.88 0.022539
Target:  5'- uGGUGggGAacaAGCCGCCGGCGUCGGCGg -3'
miRNA:   3'- gCUACuaCU---UCGGCGGCUGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 47771 0.68 0.478018
Target:  5'- uCGAgGAggccgcGAAGCgCGCCGACGgaacuguccagcgcaCCGGCGu -3'
miRNA:   3'- -GCUaCUa-----CUUCG-GCGGCUGC---------------GGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 4493 0.68 0.464324
Target:  5'- ---cGAUGAAGUcuuCGuuGAUGCCGcGCGa -3'
miRNA:   3'- gcuaCUACUUCG---GCggCUGCGGC-CGC- -5'
12409 3' -58.2 NC_003324.1 + 50375 0.69 0.426376
Target:  5'- -uAUGGUGAAcGCCuucuuGCCGuCGaCCGGCGg -3'
miRNA:   3'- gcUACUACUU-CGG-----CGGCuGC-GGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 22469 0.66 0.608311
Target:  5'- aGGUGGUGAcggauugggAGCUGUCGcCGUCGGg- -3'
miRNA:   3'- gCUACUACU---------UCGGCGGCuGCGGCCgc -5'
12409 3' -58.2 NC_003324.1 + 23871 0.66 0.608311
Target:  5'- ---aGAaGAAGCuCGCCGAgGCCGaacGCGc -3'
miRNA:   3'- gcuaCUaCUUCG-GCGGCUgCGGC---CGC- -5'
12409 3' -58.2 NC_003324.1 + 596 0.71 0.302012
Target:  5'- aGAUGGUcGAGCUGCCGACcUUGGUGa -3'
miRNA:   3'- gCUACUAcUUCGGCGGCUGcGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 31319 0.7 0.373074
Target:  5'- ----aGUGcGGCCGgCGGCGCUGGCGc -3'
miRNA:   3'- gcuacUACuUCGGCgGCUGCGGCCGC- -5'
12409 3' -58.2 NC_003324.1 + 19581 0.7 0.373074
Target:  5'- cCGcgGcaaGAAGCaCGCCGACGCCGaCGc -3'
miRNA:   3'- -GCuaCua-CUUCG-GCGGCUGCGGCcGC- -5'
12409 3' -58.2 NC_003324.1 + 39267 0.66 0.576458
Target:  5'- -uAUGAUcGGuuGCCGCCGugGCUGcGCc -3'
miRNA:   3'- gcUACUA-CUu-CGGCGGCugCGGC-CGc -5'
12409 3' -58.2 NC_003324.1 + 48821 0.7 0.35634
Target:  5'- uGAUGGccUGcAGCCuGCUGGCGCCGacGCGg -3'
miRNA:   3'- gCUACU--ACuUCGG-CGGCUGCGGC--CGC- -5'
12409 3' -58.2 NC_003324.1 + 14549 0.67 0.50396
Target:  5'- gCGAcGGUGccagcaAGGuCCGCCGAugcuuggaCGCCGGCa -3'
miRNA:   3'- -GCUaCUAC------UUC-GGCGGCU--------GCGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 48714 0.69 0.399156
Target:  5'- cCGAUGAUGuugcGGCggaGCCgGAUGCgGGCGc -3'
miRNA:   3'- -GCUACUACu---UCGg--CGG-CUGCGgCCGC- -5'
12409 3' -58.2 NC_003324.1 + 35913 0.71 0.316857
Target:  5'- uCGAaucccUGAUGGAGCUGCUGGgcaaGCUGGCu -3'
miRNA:   3'- -GCU-----ACUACUUCGGCGGCUg---CGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 52399 0.72 0.280761
Target:  5'- aGAUGuagaccuugcUGggGUCGCaGACGCCGGCc -3'
miRNA:   3'- gCUACu---------ACuuCGGCGgCUGCGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 20353 0.68 0.483948
Target:  5'- gCGGUGGcccgcUGAGcCCGUaUGACGCCGGCu -3'
miRNA:   3'- -GCUACU-----ACUUcGGCG-GCUGCGGCCGc -5'
12409 3' -58.2 NC_003324.1 + 47711 0.69 0.435692
Target:  5'- aCGAUGgcGGcccGGUCGCCGucAUGCgCGGCGu -3'
miRNA:   3'- -GCUACuaCU---UCGGCGGC--UGCG-GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.