Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12409 | 3' | -58.2 | NC_003324.1 | + | 31319 | 0.7 | 0.373074 |
Target: 5'- ----aGUGcGGCCGgCGGCGCUGGCGc -3' miRNA: 3'- gcuacUACuUCGGCgGCUGCGGCCGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 56298 | 0.66 | 0.576458 |
Target: 5'- ---gGAUGucGCCGCCGAUcgaGCgauaGGCGa -3' miRNA: 3'- gcuaCUACuuCGGCGGCUG---CGg---CCGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 596 | 0.71 | 0.302012 |
Target: 5'- aGAUGGUcGAGCUGCCGACcUUGGUGa -3' miRNA: 3'- gCUACUAcUUCGGCGGCUGcGGCCGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 35913 | 0.71 | 0.316857 |
Target: 5'- uCGAaucccUGAUGGAGCUGCUGGgcaaGCUGGCu -3' miRNA: 3'- -GCU-----ACUACUUCGGCGGCUg---CGGCCGc -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 35220 | 0.71 | 0.312346 |
Target: 5'- aGGUGAcGAAGgCGCugaggucaacggcgaCGGCGCUGGCGa -3' miRNA: 3'- gCUACUaCUUCgGCG---------------GCUGCGGCCGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 32560 | 0.74 | 0.202243 |
Target: 5'- -cGUGAUcgccGAGGCUGCCGGCGaaGGCGa -3' miRNA: 3'- gcUACUA----CUUCGGCGGCUGCggCCGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 22825 | 0.79 | 0.098028 |
Target: 5'- aGAUGGaaAGGCUGCuCGACGCCGGCa -3' miRNA: 3'- gCUACUacUUCGGCG-GCUGCGGCCGc -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 14900 | 0.83 | 0.0487 |
Target: 5'- cCGAUGccgcccagGAAGCUGCCGAUGCCGGCc -3' miRNA: 3'- -GCUACua------CUUCGGCGGCUGCGGCCGc -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 2519 | 0.88 | 0.022539 |
Target: 5'- uGGUGggGAacaAGCCGCCGGCGUCGGCGg -3' miRNA: 3'- gCUACuaCU---UCGGCGGCUGCGGCCGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 23763 | 0.73 | 0.224135 |
Target: 5'- uCGAUG-UGAAGCCcggcgcGCCGugGauaCCGGCGa -3' miRNA: 3'- -GCUACuACUUCGG------CGGCugC---GGCCGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 48821 | 0.7 | 0.35634 |
Target: 5'- uGAUGGccUGcAGCCuGCUGGCGCCGacGCGg -3' miRNA: 3'- gCUACU--ACuUCGG-CGGCUGCGGC--CGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 19581 | 0.7 | 0.373074 |
Target: 5'- cCGcgGcaaGAAGCaCGCCGACGCCGaCGc -3' miRNA: 3'- -GCuaCua-CUUCG-GCGGCUGCGGCcGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 48714 | 0.69 | 0.399156 |
Target: 5'- cCGAUGAUGuugcGGCggaGCCgGAUGCgGGCGc -3' miRNA: 3'- -GCUACUACu---UCGg--CGG-CUGCGgCCGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 50375 | 0.69 | 0.426376 |
Target: 5'- -uAUGGUGAAcGCCuucuuGCCGuCGaCCGGCGg -3' miRNA: 3'- gcUACUACUU-CGG-----CGGCuGC-GGCCGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 47711 | 0.69 | 0.435692 |
Target: 5'- aCGAUGgcGGcccGGUCGCCGucAUGCgCGGCGu -3' miRNA: 3'- -GCUACuaCU---UCGGCGGC--UGCG-GCCGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 4493 | 0.68 | 0.464324 |
Target: 5'- ---cGAUGAAGUcuuCGuuGAUGCCGcGCGa -3' miRNA: 3'- gcuaCUACUUCG---GCggCUGCGGC-CGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 47771 | 0.68 | 0.478018 |
Target: 5'- uCGAgGAggccgcGAAGCgCGCCGACGgaacuguccagcgcaCCGGCGu -3' miRNA: 3'- -GCUaCUa-----CUUCG-GCGGCUGC---------------GGCCGC- -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 20353 | 0.68 | 0.483948 |
Target: 5'- gCGGUGGcccgcUGAGcCCGUaUGACGCCGGCu -3' miRNA: 3'- -GCUACU-----ACUUcGGCG-GCUGCGGCCGc -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 14549 | 0.67 | 0.50396 |
Target: 5'- gCGAcGGUGccagcaAGGuCCGCCGAugcuuggaCGCCGGCa -3' miRNA: 3'- -GCUaCUAC------UUC-GGCGGCU--------GCGGCCGc -5' |
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12409 | 3' | -58.2 | NC_003324.1 | + | 39267 | 0.66 | 0.576458 |
Target: 5'- -uAUGAUcGGuuGCCGCCGugGCUGcGCc -3' miRNA: 3'- gcUACUA-CUu-CGGCGGCugCGGC-CGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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