Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12412 | 5' | -54.4 | NC_003324.1 | + | 51381 | 0.65 | 0.800397 |
Target: 5'- cCGuauGAUCGuGAcgccuGCCGGCGGCugauccuugcaaaACCGUCg -3' miRNA: 3'- aGC---UUAGC-CUu----CGGCCGCUG-------------UGGUAG- -5' |
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12412 | 5' | -54.4 | NC_003324.1 | + | 33461 | 0.66 | 0.761598 |
Target: 5'- cCGAAUUuuauGGAGCCGuCGACGCCGa- -3' miRNA: 3'- aGCUUAGc---CUUCGGCcGCUGUGGUag -5' |
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12412 | 5' | -54.4 | NC_003324.1 | + | 44746 | 0.66 | 0.751297 |
Target: 5'- aCG-AUCGacGAAGUgcGCGACACCAUCu -3' miRNA: 3'- aGCuUAGC--CUUCGgcCGCUGUGGUAG- -5' |
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12412 | 5' | -54.4 | NC_003324.1 | + | 14019 | 0.66 | 0.761598 |
Target: 5'- aUCGAGaUGGGAGCCaaCGGCACUcgCu -3' miRNA: 3'- -AGCUUaGCCUUCGGccGCUGUGGuaG- -5' |
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12412 | 5' | -54.4 | NC_003324.1 | + | 45992 | 0.66 | 0.771766 |
Target: 5'- uUCGcuUCcGAAG-CGGCGGCGCCGaaUCg -3' miRNA: 3'- -AGCuuAGcCUUCgGCCGCUGUGGU--AG- -5' |
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12412 | 5' | -54.4 | NC_003324.1 | + | 37849 | 0.66 | 0.771766 |
Target: 5'- gUGGAUUuggucagaGGAAGUCGGCGAUcCCGcUCa -3' miRNA: 3'- aGCUUAG--------CCUUCGGCCGCUGuGGU-AG- -5' |
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12412 | 5' | -54.4 | NC_003324.1 | + | 21180 | 0.66 | 0.778799 |
Target: 5'- cCGAcgUGGAAGCCGacgcagcacgcgccGCGGCgGCCGa- -3' miRNA: 3'- aGCUuaGCCUUCGGC--------------CGCUG-UGGUag -5' |
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12412 | 5' | -54.4 | NC_003324.1 | + | 27234 | 0.66 | 0.78179 |
Target: 5'- aUGAAaaGGAAGUgGGCGGCcaaCGUCg -3' miRNA: 3'- aGCUUagCCUUCGgCCGCUGug-GUAG- -5' |
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12412 | 5' | -54.4 | NC_003324.1 | + | 41040 | 0.66 | 0.78179 |
Target: 5'- uUCGAGU-GuGAGCCGGCGAUAgCCuugCa -3' miRNA: 3'- -AGCUUAgCcUUCGGCCGCUGU-GGua-G- -5' |
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12412 | 5' | -54.4 | NC_003324.1 | + | 54151 | 0.66 | 0.791658 |
Target: 5'- cUCGA--CGGGAGCUGGCcGCGUCAUg -3' miRNA: 3'- -AGCUuaGCCUUCGGCCGcUGUGGUAg -5' |
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12412 | 5' | -54.4 | NC_003324.1 | + | 26636 | 0.66 | 0.78179 |
Target: 5'- cUCGAuaUGGuAGCCGGCGAgggugaCACCu-- -3' miRNA: 3'- -AGCUuaGCCuUCGGCCGCU------GUGGuag -5' |
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12412 | 5' | -54.4 | NC_003324.1 | + | 16670 | 0.66 | 0.771766 |
Target: 5'- cUCGAGUCGGAGGCauGCaucCGCCu-- -3' miRNA: 3'- -AGCUUAGCCUUCGgcCGcu-GUGGuag -5' |
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12412 | 5' | -54.4 | NC_003324.1 | + | 50203 | 0.66 | 0.761598 |
Target: 5'- gCGAcaaGUCGGcGAGCCuugaaGGCGugACCuugAUCg -3' miRNA: 3'- aGCU---UAGCC-UUCGG-----CCGCugUGG---UAG- -5' |
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12412 | 5' | -54.4 | NC_003324.1 | + | 5401 | 0.66 | 0.751297 |
Target: 5'- uUCGGcUCGGAAGauGGCGcccGCACCu-- -3' miRNA: 3'- -AGCUuAGCCUUCggCCGC---UGUGGuag -5' |
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12412 | 5' | -54.4 | NC_003324.1 | + | 16140 | 0.67 | 0.708994 |
Target: 5'- uUCGGuagCGGggGCCGcGCcaggcaucgcuGGCACCGa- -3' miRNA: 3'- -AGCUua-GCCuuCGGC-CG-----------CUGUGGUag -5' |
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12412 | 5' | -54.4 | NC_003324.1 | + | 26454 | 0.67 | 0.708994 |
Target: 5'- aUCGA--CGGcaauGUCGGCGACAUCAa- -3' miRNA: 3'- -AGCUuaGCCuu--CGGCCGCUGUGGUag -5' |
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12412 | 5' | -54.4 | NC_003324.1 | + | 49866 | 0.67 | 0.719712 |
Target: 5'- -gGAGUaCGGcaaguGAGCCGGCGggcaaagaucGCugCGUCg -3' miRNA: 3'- agCUUA-GCC-----UUCGGCCGC----------UGugGUAG- -5' |
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12412 | 5' | -54.4 | NC_003324.1 | + | 49214 | 0.67 | 0.730343 |
Target: 5'- cCGAcgAUCcGAAcGCCuGCGACGCCAUg -3' miRNA: 3'- aGCU--UAGcCUU-CGGcCGCUGUGGUAg -5' |
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12412 | 5' | -54.4 | NC_003324.1 | + | 14570 | 0.67 | 0.734568 |
Target: 5'- aUGggUCGcGGccugccggcgcaagcGGCCGGCGGCGCaggCg -3' miRNA: 3'- aGCuuAGC-CU---------------UCGGCCGCUGUGguaG- -5' |
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12412 | 5' | -54.4 | NC_003324.1 | + | 19380 | 0.67 | 0.740875 |
Target: 5'- aUGGAUCGac-GCCGGCGcgcgucGCGCCGUg -3' miRNA: 3'- aGCUUAGCcuuCGGCCGC------UGUGGUAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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