miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12412 5' -54.4 NC_003324.1 + 4133 1.11 0.001021
Target:  5'- cUCGAAUCGGAAGCCGGCGACACCAUCa -3'
miRNA:   3'- -AGCUUAGCCUUCGGCCGCUGUGGUAG- -5'
12412 5' -54.4 NC_003324.1 + 30459 0.8 0.133165
Target:  5'- gUCGAGggCGGcauGGCCgagGGCGACGCCAUCa -3'
miRNA:   3'- -AGCUUa-GCCu--UCGG---CCGCUGUGGUAG- -5'
12412 5' -54.4 NC_003324.1 + 3266 0.77 0.223098
Target:  5'- -aGAAagCGGAGGgCGGCGGCaACCGUCg -3'
miRNA:   3'- agCUUa-GCCUUCgGCCGCUG-UGGUAG- -5'
12412 5' -54.4 NC_003324.1 + 5820 0.74 0.326717
Target:  5'- cUCGAAaCGGuAGCCGGUGcCGCCAa- -3'
miRNA:   3'- -AGCUUaGCCuUCGGCCGCuGUGGUag -5'
12412 5' -54.4 NC_003324.1 + 12488 0.74 0.329919
Target:  5'- aUCGAAUCGGGAuggguGCCGGCGAgCAgguaaggcuugcccuUCGUCa -3'
miRNA:   3'- -AGCUUAGCCUU-----CGGCCGCU-GU---------------GGUAG- -5'
12412 5' -54.4 NC_003324.1 + 9495 0.74 0.351293
Target:  5'- -aGAAUggUGGcacGGCCGGCGGCACCAa- -3'
miRNA:   3'- agCUUA--GCCu--UCGGCCGCUGUGGUag -5'
12412 5' -54.4 NC_003324.1 + 20462 0.73 0.377153
Target:  5'- gUCGAAUaCGGcacGGCCGGCGAUAgCAa- -3'
miRNA:   3'- -AGCUUA-GCCu--UCGGCCGCUGUgGUag -5'
12412 5' -54.4 NC_003324.1 + 5552 0.71 0.462008
Target:  5'- cUUGAG-CGuGggGCgGGCGACGCCGc- -3'
miRNA:   3'- -AGCUUaGC-CuuCGgCCGCUGUGGUag -5'
12412 5' -54.4 NC_003324.1 + 17716 0.71 0.482204
Target:  5'- gUCGAuauccUCGGGcccgAGCuCGGCGGCAUCGUg -3'
miRNA:   3'- -AGCUu----AGCCU----UCG-GCCGCUGUGGUAg -5'
12412 5' -54.4 NC_003324.1 + 35579 0.71 0.482204
Target:  5'- gUCGGcgCuGGAAGCagccgguaCGGCGAuCGCCGUCc -3'
miRNA:   3'- -AGCUuaG-CCUUCG--------GCCGCU-GUGGUAG- -5'
12412 5' -54.4 NC_003324.1 + 52296 0.71 0.492461
Target:  5'- cCGAuUCGGGgcGGCCGGCGuCugCGa- -3'
miRNA:   3'- aGCUuAGCCU--UCGGCCGCuGugGUag -5'
12412 5' -54.4 NC_003324.1 + 27081 0.7 0.523806
Target:  5'- cUCGAGUCGuGGgcagAGaCCGGCGGCAacacccUCAUCg -3'
miRNA:   3'- -AGCUUAGC-CU----UC-GGCCGCUGU------GGUAG- -5'
12412 5' -54.4 NC_003324.1 + 20583 0.7 0.534427
Target:  5'- gCGAG-CGGGAuCCGGUgcuguGGCGCCGUCg -3'
miRNA:   3'- aGCUUaGCCUUcGGCCG-----CUGUGGUAG- -5'
12412 5' -54.4 NC_003324.1 + 33774 0.7 0.545122
Target:  5'- -aGGAUUGGAAGCCuGUGAUGCCu-- -3'
miRNA:   3'- agCUUAGCCUUCGGcCGCUGUGGuag -5'
12412 5' -54.4 NC_003324.1 + 26118 0.7 0.56671
Target:  5'- -aGAGcgcCGGcAGaCCGGUGACGCCAUUg -3'
miRNA:   3'- agCUUa--GCCuUC-GGCCGCUGUGGUAG- -5'
12412 5' -54.4 NC_003324.1 + 14487 0.69 0.577587
Target:  5'- cCGucgCGGAAGCCGGUGcaGCCAa- -3'
miRNA:   3'- aGCuuaGCCUUCGGCCGCugUGGUag -5'
12412 5' -54.4 NC_003324.1 + 20800 0.69 0.588509
Target:  5'- gCGAGgcggCGGAccguGuuGGUGACGCgCAUCg -3'
miRNA:   3'- aGCUUa---GCCUu---CggCCGCUGUG-GUAG- -5'
12412 5' -54.4 NC_003324.1 + 22461 0.69 0.599468
Target:  5'- aCGGAUUGGGAGCUGu---CGCCGUCg -3'
miRNA:   3'- aGCUUAGCCUUCGGCcgcuGUGGUAG- -5'
12412 5' -54.4 NC_003324.1 + 39824 0.69 0.599468
Target:  5'- cCGAAUCGaacGAauAGCCGGUGGCACg--- -3'
miRNA:   3'- aGCUUAGC---CU--UCGGCCGCUGUGguag -5'
12412 5' -54.4 NC_003324.1 + 39660 0.69 0.621461
Target:  5'- aCGAucCGGAGGCUGGUgcugacguGGCGCCAg- -3'
miRNA:   3'- aGCUuaGCCUUCGGCCG--------CUGUGGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.