miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12413 5' -54.8 NC_003324.1 + 1469 0.66 0.696914
Target:  5'- -aGCACcgUcgGCGCaucgaugucaCGGAUCGGCAu -3'
miRNA:   3'- cgCGUGuuGuaCGCG----------GUCUAGCCGUu -5'
12413 5' -54.8 NC_003324.1 + 1602 0.66 0.696914
Target:  5'- cGCGCACcAC-UGcCGCCGGAUCcucgcuGGCc- -3'
miRNA:   3'- -CGCGUGuUGuAC-GCGGUCUAG------CCGuu -5'
12413 5' -54.8 NC_003324.1 + 4318 1.09 0.000985
Target:  5'- cGCGCACAACAUGCGCCAGAUCGGCAAg -3'
miRNA:   3'- -CGCGUGUUGUACGCGGUCUAGCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 6239 0.73 0.297328
Target:  5'- aGCaGCGCAGCAaGCGCCAGA--GGUAAg -3'
miRNA:   3'- -CG-CGUGUUGUaCGCGGUCUagCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 6673 0.67 0.630015
Target:  5'- -gGCACAuaggacGCuGUGUGCCAGuUCGGCu- -3'
miRNA:   3'- cgCGUGU------UG-UACGCGGUCuAGCCGuu -5'
12413 5' -54.8 NC_003324.1 + 11233 0.69 0.530377
Target:  5'- uGUGCG-AGCcgGcCGCCAGAcCGGCGAa -3'
miRNA:   3'- -CGCGUgUUGuaC-GCGGUCUaGCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 11838 0.66 0.718816
Target:  5'- cUGCGCGACcgG-GCCGGGcaCGGCAu -3'
miRNA:   3'- cGCGUGUUGuaCgCGGUCUa-GCCGUu -5'
12413 5' -54.8 NC_003324.1 + 14470 0.66 0.729639
Target:  5'- uGCGCGCucgguuGCG-GCGCguuGAUUGGCAGc -3'
miRNA:   3'- -CGCGUGu-----UGUaCGCGgu-CUAGCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 17355 0.67 0.652422
Target:  5'- cGUGCAUGACGUGguCGCaCAGGcgcUCGGCu- -3'
miRNA:   3'- -CGCGUGUUGUAC--GCG-GUCU---AGCCGuu -5'
12413 5' -54.8 NC_003324.1 + 18104 0.67 0.663602
Target:  5'- uCGCAUGGCccgugGCGCCGGccaAUCGGUAu -3'
miRNA:   3'- cGCGUGUUGua---CGCGGUC---UAGCCGUu -5'
12413 5' -54.8 NC_003324.1 + 18327 0.67 0.641223
Target:  5'- cCGCcaaAGCggGCGCCgaGGAUUGGCAGg -3'
miRNA:   3'- cGCGug-UUGuaCGCGG--UCUAGCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 19393 0.68 0.58419
Target:  5'- gGCGCGCGuc--GCGCCgugcaugAGGUCGGCu- -3'
miRNA:   3'- -CGCGUGUuguaCGCGG-------UCUAGCCGuu -5'
12413 5' -54.8 NC_003324.1 + 20608 0.7 0.446961
Target:  5'- gGCGCugAugG-GCGCUugcGGUCGGCGGg -3'
miRNA:   3'- -CGCGugUugUaCGCGGu--CUAGCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 21862 0.67 0.652422
Target:  5'- aGCGCucgACAACAUGuCGCCGGAcgaguuccUCGcccuGCAGa -3'
miRNA:   3'- -CGCG---UGUUGUAC-GCGGUCU--------AGC----CGUU- -5'
12413 5' -54.8 NC_003324.1 + 22090 0.71 0.408067
Target:  5'- uGCGCuCGACAUGCGCCucGUCGauGCGGg -3'
miRNA:   3'- -CGCGuGUUGUACGCGGucUAGC--CGUU- -5'
12413 5' -54.8 NC_003324.1 + 22333 0.73 0.320664
Target:  5'- -gGCGCAGCu--CGCCGcGAUCGGCAAg -3'
miRNA:   3'- cgCGUGUUGuacGCGGU-CUAGCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 23191 0.66 0.729639
Target:  5'- aGCGCgguaccgcucuGCAuCGUGCGCCAGAUgaagcucuucUGGUg- -3'
miRNA:   3'- -CGCG-----------UGUuGUACGCGGUCUA----------GCCGuu -5'
12413 5' -54.8 NC_003324.1 + 23748 0.7 0.484703
Target:  5'- -aGCuGCGACGuUGCGCCGGAaaucgggguccgauUCGGCGg -3'
miRNA:   3'- cgCG-UGUUGU-ACGCGGUCU--------------AGCCGUu -5'
12413 5' -54.8 NC_003324.1 + 23923 0.67 0.641223
Target:  5'- aGCGC-CGACAUgGCGUCgAGGUucacgCGGCGAa -3'
miRNA:   3'- -CGCGuGUUGUA-CGCGG-UCUA-----GCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 25888 0.67 0.663602
Target:  5'- gGCGCGCAgGCGUGCGUCucgacuauGA-CGGUAc -3'
miRNA:   3'- -CGCGUGU-UGUACGCGGu-------CUaGCCGUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.