miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12413 5' -54.8 NC_003324.1 + 4318 1.09 0.000985
Target:  5'- cGCGCACAACAUGCGCCAGAUCGGCAAg -3'
miRNA:   3'- -CGCGUGUUGUACGCGGUCUAGCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 23191 0.66 0.729639
Target:  5'- aGCGCgguaccgcucuGCAuCGUGCGCCAGAUgaagcucuucUGGUg- -3'
miRNA:   3'- -CGCG-----------UGUuGUACGCGGUCUA----------GCCGuu -5'
12413 5' -54.8 NC_003324.1 + 54047 0.66 0.718816
Target:  5'- gGCGCGCAgaggcuuucGC-UGCGgCGGAaUCGGCc- -3'
miRNA:   3'- -CGCGUGU---------UGuACGCgGUCU-AGCCGuu -5'
12413 5' -54.8 NC_003324.1 + 39450 0.66 0.696914
Target:  5'- -aGUACAGguucucgAUGCGCCacaucGGGUCGGCGAa -3'
miRNA:   3'- cgCGUGUUg------UACGCGG-----UCUAGCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 50127 0.66 0.674752
Target:  5'- gGCGC-CAugccuuuggaGCGUGCccGCCAGAUcguuaCGGCGAu -3'
miRNA:   3'- -CGCGuGU----------UGUACG--CGGUCUA-----GCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 29754 0.67 0.663602
Target:  5'- uCGUACGccuCgAUGCGCCcaaGGAUCGGCu- -3'
miRNA:   3'- cGCGUGUu--G-UACGCGG---UCUAGCCGuu -5'
12413 5' -54.8 NC_003324.1 + 18327 0.67 0.641223
Target:  5'- cCGCcaaAGCggGCGCCgaGGAUUGGCAGg -3'
miRNA:   3'- cGCGug-UUGuaCGCGG--UCUAGCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 23923 0.67 0.641223
Target:  5'- aGCGC-CGACAUgGCGUCgAGGUucacgCGGCGAa -3'
miRNA:   3'- -CGCGuGUUGUA-CGCGG-UCUA-----GCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 42187 0.67 0.630015
Target:  5'- aCG-ACGGCAcUGCGCCGGAgugaUCGGCc- -3'
miRNA:   3'- cGCgUGUUGU-ACGCGGUCU----AGCCGuu -5'
12413 5' -54.8 NC_003324.1 + 19393 0.68 0.58419
Target:  5'- gGCGCGCGuc--GCGCCgugcaugAGGUCGGCu- -3'
miRNA:   3'- -CGCGUGUuguaCGCGG-------UCUAGCCGuu -5'
12413 5' -54.8 NC_003324.1 + 28239 0.69 0.508917
Target:  5'- cGCGUcaucgacugcuGCGACugGUGCCGGAUCGGUGGa -3'
miRNA:   3'- -CGCG-----------UGUUGuaCGCGGUCUAGCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 23748 0.7 0.484703
Target:  5'- -aGCuGCGACGuUGCGCCGGAaaucgggguccgauUCGGCGg -3'
miRNA:   3'- cgCG-UGUUGU-ACGCGGUCU--------------AGCCGUu -5'
12413 5' -54.8 NC_003324.1 + 42751 0.73 0.328742
Target:  5'- gGCGCuCuccCAUGCG-CGGAUCGGCAAc -3'
miRNA:   3'- -CGCGuGuu-GUACGCgGUCUAGCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 6239 0.73 0.297328
Target:  5'- aGCaGCGCAGCAaGCGCCAGA--GGUAAg -3'
miRNA:   3'- -CG-CGUGUUGUaCGCGGUCUagCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 53412 0.66 0.707903
Target:  5'- uGCGCACGGaugaagucCAUGCGCUcaa-CGGCGAc -3'
miRNA:   3'- -CGCGUGUU--------GUACGCGGucuaGCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 44313 0.66 0.707903
Target:  5'- cGUGCACAGCGuUGCGCgC-GAUCaGCu- -3'
miRNA:   3'- -CGCGUGUUGU-ACGCG-GuCUAGcCGuu -5'
12413 5' -54.8 NC_003324.1 + 37512 0.66 0.718816
Target:  5'- uGUGCGCGGCaAUGCGCUcGAUa-GCAAc -3'
miRNA:   3'- -CGCGUGUUG-UACGCGGuCUAgcCGUU- -5'
12413 5' -54.8 NC_003324.1 + 11838 0.66 0.718816
Target:  5'- cUGCGCGACcgG-GCCGGGcaCGGCAu -3'
miRNA:   3'- cGCGUGUUGuaCgCGGUCUa-GCCGUu -5'
12413 5' -54.8 NC_003324.1 + 30734 0.66 0.729639
Target:  5'- cCGCGCAGCuaucuccgugGCGUCGGGgaaUCGGCc- -3'
miRNA:   3'- cGCGUGUUGua--------CGCGGUCU---AGCCGuu -5'
12413 5' -54.8 NC_003324.1 + 35691 0.74 0.282516
Target:  5'- uGCGCGCAGCAgaaGCCGacAUCGGCAAg -3'
miRNA:   3'- -CGCGUGUUGUacgCGGUc-UAGCCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.