miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12413 5' -54.8 NC_003324.1 + 55530 0.68 0.585302
Target:  5'- aGCGCcaaauCAGCGUGCGUCAugcGUCGGUc- -3'
miRNA:   3'- -CGCGu----GUUGUACGCGGUc--UAGCCGuu -5'
12413 5' -54.8 NC_003324.1 + 32262 0.7 0.487831
Target:  5'- cGCGCACGAC--GCGC---GUCGGCAAu -3'
miRNA:   3'- -CGCGUGUUGuaCGCGgucUAGCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 43476 0.69 0.530377
Target:  5'- --cCACGAC-UGCgGUCAGAUCGGCGGu -3'
miRNA:   3'- cgcGUGUUGuACG-CGGUCUAGCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 29713 0.7 0.467165
Target:  5'- gGCG-GCGGCGuUGCGCCAGAagcaGGCAGa -3'
miRNA:   3'- -CGCgUGUUGU-ACGCGGUCUag--CCGUU- -5'
12413 5' -54.8 NC_003324.1 + 29031 0.7 0.437042
Target:  5'- aGCGCuugcucaAGCA-GCGCCAGG-CGGCAc -3'
miRNA:   3'- -CGCGug-----UUGUaCGCGGUCUaGCCGUu -5'
12413 5' -54.8 NC_003324.1 + 31516 0.71 0.417592
Target:  5'- -aGCACGACAUGgcaguUGCCGGA-CGGUAAg -3'
miRNA:   3'- cgCGUGUUGUAC-----GCGGUCUaGCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 22090 0.71 0.408067
Target:  5'- uGCGCuCGACAUGCGCCucGUCGauGCGGg -3'
miRNA:   3'- -CGCGuGUUGUACGCGGucUAGC--CGUU- -5'
12413 5' -54.8 NC_003324.1 + 22333 0.73 0.320664
Target:  5'- -gGCGCAGCu--CGCCGcGAUCGGCAAg -3'
miRNA:   3'- cgCGUGUUGuacGCGGU-CUAGCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 35691 0.74 0.282516
Target:  5'- uGCGCGCAGCAgaaGCCGacAUCGGCAAg -3'
miRNA:   3'- -CGCGUGUUGUacgCGGUc-UAGCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 36268 0.7 0.446961
Target:  5'- uCGCGCAACAucaguaUGCuGCagCAGGUCGGCGg -3'
miRNA:   3'- cGCGUGUUGU------ACG-CG--GUCUAGCCGUu -5'
12413 5' -54.8 NC_003324.1 + 11233 0.69 0.530377
Target:  5'- uGUGCG-AGCcgGcCGCCAGAcCGGCGAa -3'
miRNA:   3'- -CGCGUgUUGuaC-GCGGUCUaGCCGUU- -5'
12413 5' -54.8 NC_003324.1 + 27180 0.67 0.626652
Target:  5'- cGCGCugGuguGC-UGCGCCAGAUgcagggagccgcacCGGCc- -3'
miRNA:   3'- -CGCGugU---UGuACGCGGUCUA--------------GCCGuu -5'
12413 5' -54.8 NC_003324.1 + 6673 0.67 0.630015
Target:  5'- -gGCACAuaggacGCuGUGUGCCAGuUCGGCu- -3'
miRNA:   3'- cgCGUGU------UG-UACGCGGUCuAGCCGuu -5'
12413 5' -54.8 NC_003324.1 + 21862 0.67 0.652422
Target:  5'- aGCGCucgACAACAUGuCGCCGGAcgaguuccUCGcccuGCAGa -3'
miRNA:   3'- -CGCG---UGUUGUAC-GCGGUCU--------AGC----CGUU- -5'
12413 5' -54.8 NC_003324.1 + 17355 0.67 0.652422
Target:  5'- cGUGCAUGACGUGguCGCaCAGGcgcUCGGCu- -3'
miRNA:   3'- -CGCGUGUUGUAC--GCG-GUCU---AGCCGuu -5'
12413 5' -54.8 NC_003324.1 + 25888 0.67 0.663602
Target:  5'- gGCGCGCAgGCGUGCGUCucgacuauGA-CGGUAc -3'
miRNA:   3'- -CGCGUGU-UGUACGCGGu-------CUaGCCGUu -5'
12413 5' -54.8 NC_003324.1 + 18104 0.67 0.663602
Target:  5'- uCGCAUGGCccgugGCGCCGGccaAUCGGUAu -3'
miRNA:   3'- cGCGUGUUGua---CGCGGUC---UAGCCGUu -5'
12413 5' -54.8 NC_003324.1 + 40495 0.67 0.663602
Target:  5'- gGCG-ACGACGaaGCGCCAGAcgaaGGCGAa -3'
miRNA:   3'- -CGCgUGUUGUa-CGCGGUCUag--CCGUU- -5'
12413 5' -54.8 NC_003324.1 + 44593 0.66 0.674752
Target:  5'- aCGCACcGCAUGCgcguGCCGuccGAUCGGgAAa -3'
miRNA:   3'- cGCGUGuUGUACG----CGGU---CUAGCCgUU- -5'
12413 5' -54.8 NC_003324.1 + 43997 0.66 0.6792
Target:  5'- uGCGgGCucgguGCcgGCGCCaaaggcuucaacaagGGAUCGGCu- -3'
miRNA:   3'- -CGCgUGu----UGuaCGCGG---------------UCUAGCCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.