miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12415 3' -50.9 NC_003324.1 + 4611 1.1 0.002289
Target:  5'- cGAAGAACGCCAACAUGAUGCCGCUGAu -3'
miRNA:   3'- -CUUCUUGCGGUUGUACUACGGCGACU- -5'
12415 3' -50.9 NC_003324.1 + 7166 0.69 0.783974
Target:  5'- ----cGCGCCAACAguUGGUG-CGCUGGc -3'
miRNA:   3'- cuucuUGCGGUUGU--ACUACgGCGACU- -5'
12415 3' -50.9 NC_003324.1 + 7647 0.72 0.605952
Target:  5'- cGGAGucGCGCCGGCA--GUGCCgGCUGGc -3'
miRNA:   3'- -CUUCu-UGCGGUUGUacUACGG-CGACU- -5'
12415 3' -50.9 NC_003324.1 + 8396 0.7 0.726181
Target:  5'- --cGAGCGCCGACGgcguuacccugcgGAUGaCGCUGGc -3'
miRNA:   3'- cuuCUUGCGGUUGUa------------CUACgGCGACU- -5'
12415 3' -50.9 NC_003324.1 + 10288 0.66 0.892065
Target:  5'- ----uGCGCCGGCAUGAUauuggcGCCGaUGAg -3'
miRNA:   3'- cuucuUGCGGUUGUACUA------CGGCgACU- -5'
12415 3' -50.9 NC_003324.1 + 13101 0.69 0.773588
Target:  5'- uGAGAGgGCgGGCGuUGAUGCCGCc-- -3'
miRNA:   3'- cUUCUUgCGgUUGU-ACUACGGCGacu -5'
12415 3' -50.9 NC_003324.1 + 14519 0.66 0.906446
Target:  5'- --uGGACGCCGGCAUGG-GCC-CaGAg -3'
miRNA:   3'- cuuCUUGCGGUUGUACUaCGGcGaCU- -5'
12415 3' -50.9 NC_003324.1 + 14608 0.67 0.842289
Target:  5'- --uGAGCGCCAGCGccuUGUCGCgGAc -3'
miRNA:   3'- cuuCUUGCGGUUGUacuACGGCGaCU- -5'
12415 3' -50.9 NC_003324.1 + 15047 0.66 0.892065
Target:  5'- -----gUGCCGACGUGAUGcCCGCc-- -3'
miRNA:   3'- cuucuuGCGGUUGUACUAC-GGCGacu -5'
12415 3' -50.9 NC_003324.1 + 17610 0.69 0.773588
Target:  5'- -cGGcGCGCCGuugaGCAcGAUGCCGCcGAg -3'
miRNA:   3'- cuUCuUGCGGU----UGUaCUACGGCGaCU- -5'
12415 3' -50.9 NC_003324.1 + 19500 0.66 0.906446
Target:  5'- ---cGGCGUCGGCGUGcuucuUGCCGCgGAa -3'
miRNA:   3'- cuucUUGCGGUUGUACu----ACGGCGaCU- -5'
12415 3' -50.9 NC_003324.1 + 19839 0.69 0.773588
Target:  5'- cGggGGACGCgAACAgaccgGCCcuGCUGAa -3'
miRNA:   3'- -CuuCUUGCGgUUGUacua-CGG--CGACU- -5'
12415 3' -50.9 NC_003324.1 + 22189 0.66 0.913197
Target:  5'- cGGAGAACGCUccACgGUGAUGuuGgUGGg -3'
miRNA:   3'- -CUUCUUGCGGu-UG-UACUACggCgACU- -5'
12415 3' -50.9 NC_003324.1 + 23233 0.67 0.842289
Target:  5'- --uGGGCGCCGGCAaGAcguuUGCCGCc-- -3'
miRNA:   3'- cuuCUUGCGGUUGUaCU----ACGGCGacu -5'
12415 3' -50.9 NC_003324.1 + 23920 0.7 0.730588
Target:  5'- -uAGAGCGCCGACAUGgcGUCGa--- -3'
miRNA:   3'- cuUCUUGCGGUUGUACuaCGGCgacu -5'
12415 3' -50.9 NC_003324.1 + 24408 0.7 0.708397
Target:  5'- cGAAGGACcgcguuGCCGGCAUGGUGCgCGUc-- -3'
miRNA:   3'- -CUUCUUG------CGGUUGUACUACG-GCGacu -5'
12415 3' -50.9 NC_003324.1 + 24721 0.66 0.913197
Target:  5'- cGAcaAGC-CCGACAUGAUGCuCGgUGAc -3'
miRNA:   3'- -CUucUUGcGGUUGUACUACG-GCgACU- -5'
12415 3' -50.9 NC_003324.1 + 25622 0.66 0.913197
Target:  5'- ----uGCGCCGGCAcg--GCUGCUGAu -3'
miRNA:   3'- cuucuUGCGGUUGUacuaCGGCGACU- -5'
12415 3' -50.9 NC_003324.1 + 27757 0.67 0.86837
Target:  5'- aGGAGAagcucgGCGCCAcGCAUGAggugGUCGCg-- -3'
miRNA:   3'- -CUUCU------UGCGGU-UGUACUa---CGGCGacu -5'
12415 3' -50.9 NC_003324.1 + 28971 0.66 0.899401
Target:  5'- cGAAGGACgagGCCGGCcaGUGGUGggaCGUUGAg -3'
miRNA:   3'- -CUUCUUG---CGGUUG--UACUACg--GCGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.