Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12415 | 3' | -50.9 | NC_003324.1 | + | 4611 | 1.1 | 0.002289 |
Target: 5'- cGAAGAACGCCAACAUGAUGCCGCUGAu -3' miRNA: 3'- -CUUCUUGCGGUUGUACUACGGCGACU- -5' |
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12415 | 3' | -50.9 | NC_003324.1 | + | 22189 | 0.66 | 0.913197 |
Target: 5'- cGGAGAACGCUccACgGUGAUGuuGgUGGg -3' miRNA: 3'- -CUUCUUGCGGu-UG-UACUACggCgACU- -5' |
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12415 | 3' | -50.9 | NC_003324.1 | + | 25622 | 0.66 | 0.913197 |
Target: 5'- ----uGCGCCGGCAcg--GCUGCUGAu -3' miRNA: 3'- cuucuUGCGGUUGUacuaCGGCGACU- -5' |
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12415 | 3' | -50.9 | NC_003324.1 | + | 19500 | 0.66 | 0.906446 |
Target: 5'- ---cGGCGUCGGCGUGcuucuUGCCGCgGAa -3' miRNA: 3'- cuucUUGCGGUUGUACu----ACGGCGaCU- -5' |
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12415 | 3' | -50.9 | NC_003324.1 | + | 43800 | 0.66 | 0.905754 |
Target: 5'- cGGGAACGCCGgcaaggcGCGUGAaaucacggaugGCCGCcgGAu -3' miRNA: 3'- cUUCUUGCGGU-------UGUACUa----------CGGCGa-CU- -5' |
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12415 | 3' | -50.9 | NC_003324.1 | + | 53568 | 0.66 | 0.899401 |
Target: 5'- aGAAGAAgGCC-GCcUGAUGCCGg--- -3' miRNA: 3'- -CUUCUUgCGGuUGuACUACGGCgacu -5' |
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12415 | 3' | -50.9 | NC_003324.1 | + | 49121 | 0.66 | 0.892065 |
Target: 5'- --cGAuCGCCAAgAUGGcggGCCGCUcGAu -3' miRNA: 3'- cuuCUuGCGGUUgUACUa--CGGCGA-CU- -5' |
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12415 | 3' | -50.9 | NC_003324.1 | + | 31724 | 0.66 | 0.882103 |
Target: 5'- cAGGAGCGCCGAUGUucuucgacauccccGAUGCC-UUGAa -3' miRNA: 3'- cUUCUUGCGGUUGUA--------------CUACGGcGACU- -5' |
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12415 | 3' | -50.9 | NC_003324.1 | + | 37647 | 0.67 | 0.86837 |
Target: 5'- aGGAGGuCGCCGAgGUGGU-CCGCaaUGAa -3' miRNA: 3'- -CUUCUuGCGGUUgUACUAcGGCG--ACU- -5' |
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12415 | 3' | -50.9 | NC_003324.1 | + | 53500 | 0.68 | 0.814061 |
Target: 5'- --cGAAUGCCGGC--GAUGCC-CUGAu -3' miRNA: 3'- cuuCUUGCGGUUGuaCUACGGcGACU- -5' |
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12415 | 3' | -50.9 | NC_003324.1 | + | 48089 | 0.8 | 0.210822 |
Target: 5'- uGAGGAucGCGCCGACGUGGcUGCUGCUcGAa -3' miRNA: 3'- -CUUCU--UGCGGUUGUACU-ACGGCGA-CU- -5' |
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12415 | 3' | -50.9 | NC_003324.1 | + | 7647 | 0.72 | 0.605952 |
Target: 5'- cGGAGucGCGCCGGCA--GUGCCgGCUGGc -3' miRNA: 3'- -CUUCu-UGCGGUUGUacUACGG-CGACU- -5' |
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12415 | 3' | -50.9 | NC_003324.1 | + | 47821 | 0.7 | 0.685882 |
Target: 5'- gGAAGAcgaauaccugACGCCu-UAUGAggcggcgcUGCCGCUGAa -3' miRNA: 3'- -CUUCU----------UGCGGuuGUACU--------ACGGCGACU- -5' |
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12415 | 3' | -50.9 | NC_003324.1 | + | 23920 | 0.7 | 0.730588 |
Target: 5'- -uAGAGCGCCGACAUGgcGUCGa--- -3' miRNA: 3'- cuUCUUGCGGUUGUACuaCGGCgacu -5' |
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12415 | 3' | -50.9 | NC_003324.1 | + | 48439 | 0.69 | 0.773588 |
Target: 5'- cGAAGAGCGCCGcgccgagaAgAUGGUGCgCGCc-- -3' miRNA: 3'- -CUUCUUGCGGU--------UgUACUACG-GCGacu -5' |
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12415 | 3' | -50.9 | NC_003324.1 | + | 17610 | 0.69 | 0.773588 |
Target: 5'- -cGGcGCGCCGuugaGCAcGAUGCCGCcGAg -3' miRNA: 3'- cuUCuUGCGGU----UGUaCUACGGCGaCU- -5' |
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12415 | 3' | -50.9 | NC_003324.1 | + | 50209 | 0.72 | 0.605952 |
Target: 5'- cGGGcACGCUccaaaGGCAUGgcGCCGCUGAu -3' miRNA: 3'- cUUCuUGCGG-----UUGUACuaCGGCGACU- -5' |
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12415 | 3' | -50.9 | NC_003324.1 | + | 14519 | 0.66 | 0.906446 |
Target: 5'- --uGGACGCCGGCAUGG-GCC-CaGAg -3' miRNA: 3'- cuuCUUGCGGUUGUACUaCGGcGaCU- -5' |
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12415 | 3' | -50.9 | NC_003324.1 | + | 28971 | 0.66 | 0.899401 |
Target: 5'- cGAAGGACgagGCCGGCcaGUGGUGggaCGUUGAg -3' miRNA: 3'- -CUUCUUG---CGGUUG--UACUACg--GCGACU- -5' |
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12415 | 3' | -50.9 | NC_003324.1 | + | 50279 | 0.66 | 0.899401 |
Target: 5'- aAGGcuCGCCGACu---UGUCGCUGAu -3' miRNA: 3'- cUUCuuGCGGUUGuacuACGGCGACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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