Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12416 | 3' | -54.6 | NC_003324.1 | + | 19488 | 0.67 | 0.696985 |
Target: 5'- gGGCGAUAGCGUcgGCG-UCGG-CGuGCu -3' miRNA: 3'- -CCGUUGUUGCAa-CGCcGGCCaGCuCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 13170 | 0.67 | 0.749729 |
Target: 5'- aGGCu---GCGUcgGCGG-CGGUCG-GCg -3' miRNA: 3'- -CCGuuguUGCAa-CGCCgGCCAGCuCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 40126 | 0.67 | 0.696985 |
Target: 5'- cGCAACuACGgugGaCGGCCGa-CGAGCu -3' miRNA: 3'- cCGUUGuUGCaa-C-GCCGGCcaGCUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 40496 | 0.67 | 0.725748 |
Target: 5'- aGGCGACGACGaagcGCcagacgaaggcgaaGGCCGGU-GAGg -3' miRNA: 3'- -CCGUUGUUGCaa--CG--------------CCGGCCAgCUCg -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 47728 | 0.67 | 0.707702 |
Target: 5'- cGGCGugccacagcuCGACGaugGCGGCCcGGUCGccgucaugcgcGGCg -3' miRNA: 3'- -CCGUu---------GUUGCaa-CGCCGG-CCAGC-----------UCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 49862 | 0.67 | 0.739371 |
Target: 5'- aGGCGGaguACGgcaaGUGaGCCGG-CGGGCa -3' miRNA: 3'- -CCGUUgu-UGCaa--CGC-CGGCCaGCUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 53291 | 0.67 | 0.728906 |
Target: 5'- cGCAGCuuuCGUUGUGaaGCCGGcCGccAGCu -3' miRNA: 3'- cCGUUGuu-GCAACGC--CGGCCaGC--UCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 48454 | 0.67 | 0.728906 |
Target: 5'- aGGCGccaaggGCAAC--UGCGaGCCGGcuuggagugCGAGCa -3' miRNA: 3'- -CCGU------UGUUGcaACGC-CGGCCa--------GCUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 39953 | 0.67 | 0.728906 |
Target: 5'- cGGCAAgGAa---GCGGCCgacaagaaGGUCGAGg -3' miRNA: 3'- -CCGUUgUUgcaaCGCCGG--------CCAGCUCg -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 1276 | 0.67 | 0.749729 |
Target: 5'- --uGACGACGUUcggaucGCGGCCGGauuUC-AGCg -3' miRNA: 3'- ccgUUGUUGCAA------CGCCGGCC---AGcUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 30088 | 0.68 | 0.686206 |
Target: 5'- cGCAGCAucGCGUcgccagagUGCaccGGCCGGgaUCGAuGCg -3' miRNA: 3'- cCGUUGU--UGCA--------ACG---CCGGCC--AGCU-CG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 20563 | 0.68 | 0.675375 |
Target: 5'- cGCAACAucccgcuccGCGaUGCGGC-GaUCGAGCg -3' miRNA: 3'- cCGUUGU---------UGCaACGCCGgCcAGCUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 56655 | 0.68 | 0.660148 |
Target: 5'- aGCGAUAGCGgcguuaugggcgGCGGCaUGGgucgCGGGCa -3' miRNA: 3'- cCGUUGUUGCaa----------CGCCG-GCCa---GCUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 7508 | 0.68 | 0.653604 |
Target: 5'- gGGCAGCAGCacccUUGCcaaucuccGuGCCccauuGGUCGAGCa -3' miRNA: 3'- -CCGUUGUUGc---AACG--------C-CGG-----CCAGCUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 32236 | 0.68 | 0.642685 |
Target: 5'- uGGUAGCGugGUaGUGGucagcgcccCCGGUCGuGUc -3' miRNA: 3'- -CCGUUGUugCAaCGCC---------GGCCAGCuCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 29216 | 0.68 | 0.654696 |
Target: 5'- cGGCAGCAcuACgGUgcgcucaccaagacgGCGGCUGuUCGGGCc -3' miRNA: 3'- -CCGUUGU--UG-CAa--------------CGCCGGCcAGCUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 14797 | 0.68 | 0.664505 |
Target: 5'- cGCGGCGAagaacGCGGCCGGcaUCG-GCa -3' miRNA: 3'- cCGUUGUUgcaa-CGCCGGCC--AGCuCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 35036 | 0.68 | 0.686206 |
Target: 5'- cGGCGGCAGCa--GCGGCCugaucGUCGucGCu -3' miRNA: 3'- -CCGUUGUUGcaaCGCCGGc----CAGCu-CG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 14578 | 0.68 | 0.686206 |
Target: 5'- cGGCcugcCGGCGcaaGCGGCCGG-CG-GCg -3' miRNA: 3'- -CCGuu--GUUGCaa-CGCCGGCCaGCuCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 51558 | 0.69 | 0.631755 |
Target: 5'- cGGCAACGGCGUUcGCaaggguaaGGCgccuuCGGUauuccCGAGCa -3' miRNA: 3'- -CCGUUGUUGCAA-CG--------CCG-----GCCA-----GCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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