miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12416 3' -54.6 NC_003324.1 + 18424 0.75 0.307963
Target:  5'- aGGCGACGcuggucauggucugcGCGaccUUGCcGCCGGUCGGGUu -3'
miRNA:   3'- -CCGUUGU---------------UGC---AACGcCGGCCAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 39386 0.73 0.387146
Target:  5'- aGCAGCuuGCGcUGCGGCUcGUUGGGCu -3'
miRNA:   3'- cCGUUGu-UGCaACGCCGGcCAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 37355 0.72 0.414493
Target:  5'- cGGCGAUuguCGUa-CuGCCGGUCGAGCu -3'
miRNA:   3'- -CCGUUGuu-GCAacGcCGGCCAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 23783 0.72 0.433372
Target:  5'- cGGCGGC-GCGUU-CGGCCucGG-CGAGCu -3'
miRNA:   3'- -CCGUUGuUGCAAcGCCGG--CCaGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 23748 0.72 0.45274
Target:  5'- aGCuGCGACGUUGC-GCCGGaaaUCGGGg -3'
miRNA:   3'- cCGuUGUUGCAACGcCGGCC---AGCUCg -5'
12416 3' -54.6 NC_003324.1 + 23150 0.71 0.486711
Target:  5'- uGGCGGCaAACGUcuUGCcggcgcccacgguauGGUCGG-CGAGCg -3'
miRNA:   3'- -CCGUUG-UUGCA--ACG---------------CCGGCCaGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 23528 0.7 0.544024
Target:  5'- cGGCAcgaucggugccccACAGCGUgGCGGCgGG-CGcGCu -3'
miRNA:   3'- -CCGU-------------UGUUGCAaCGCCGgCCaGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 43004 0.7 0.545088
Target:  5'- gGGuCGGCAACGgagaacCGGCCGGUagugGGGCc -3'
miRNA:   3'- -CC-GUUGUUGCaac---GCCGGCCAg---CUCG- -5'
12416 3' -54.6 NC_003324.1 + 9652 0.7 0.555767
Target:  5'- cGGCAACGccaacGCGcuggGCGGCgUGGggcCGGGCg -3'
miRNA:   3'- -CCGUUGU-----UGCaa--CGCCG-GCCa--GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 18793 0.7 0.566506
Target:  5'- cGGCAACGaugcgcggguccAUGgcGCGGCgaaGGUCG-GCg -3'
miRNA:   3'- -CCGUUGU------------UGCaaCGCCGg--CCAGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 35529 0.69 0.631755
Target:  5'- cGCAcCGACGUUgGUGGCUGuGaucugCGAGCg -3'
miRNA:   3'- cCGUuGUUGCAA-CGCCGGC-Ca----GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 51558 0.69 0.631755
Target:  5'- cGGCAACGGCGUUcGCaaggguaaGGCgccuuCGGUauuccCGAGCa -3'
miRNA:   3'- -CCGUUGUUGCAA-CG--------CCG-----GCCA-----GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 47728 0.67 0.707702
Target:  5'- cGGCGugccacagcuCGACGaugGCGGCCcGGUCGccgucaugcgcGGCg -3'
miRNA:   3'- -CCGUu---------GUUGCaa-CGCCGG-CCAGC-----------UCG- -5'
12416 3' -54.6 NC_003324.1 + 40126 0.67 0.696985
Target:  5'- cGCAACuACGgugGaCGGCCGa-CGAGCu -3'
miRNA:   3'- cCGUUGuUGCaa-C-GCCGGCcaGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 30088 0.68 0.686206
Target:  5'- cGCAGCAucGCGUcgccagagUGCaccGGCCGGgaUCGAuGCg -3'
miRNA:   3'- cCGUUGU--UGCA--------ACG---CCGGCC--AGCU-CG- -5'
12416 3' -54.6 NC_003324.1 + 20563 0.68 0.675375
Target:  5'- cGCAACAucccgcuccGCGaUGCGGC-GaUCGAGCg -3'
miRNA:   3'- cCGUUGU---------UGCaACGCCGgCcAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 56655 0.68 0.660148
Target:  5'- aGCGAUAGCGgcguuaugggcgGCGGCaUGGgucgCGGGCa -3'
miRNA:   3'- cCGUUGUUGCaa----------CGCCG-GCCa---GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 7508 0.68 0.653604
Target:  5'- gGGCAGCAGCacccUUGCcaaucuccGuGCCccauuGGUCGAGCa -3'
miRNA:   3'- -CCGUUGUUGc---AACG--------C-CGG-----CCAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 29714 0.69 0.609907
Target:  5'- aGGCGGCGGCGUUGCGccagaaGCaGG-CaGAGCc -3'
miRNA:   3'- -CCGUUGUUGCAACGC------CGgCCaG-CUCG- -5'
12416 3' -54.6 NC_003324.1 + 48723 0.69 0.608816
Target:  5'- uGGCucaugccGAUGAUGUUGCGGCggagcCGGaugCGGGCg -3'
miRNA:   3'- -CCG-------UUGUUGCAACGCCG-----GCCa--GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.