miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12416 3' -54.6 NC_003324.1 + 19488 0.67 0.696985
Target:  5'- gGGCGAUAGCGUcgGCG-UCGG-CGuGCu -3'
miRNA:   3'- -CCGUUGUUGCAa-CGCcGGCCaGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 18793 0.7 0.566506
Target:  5'- cGGCAACGaugcgcggguccAUGgcGCGGCgaaGGUCG-GCg -3'
miRNA:   3'- -CCGUUGU------------UGCaaCGCCGg--CCAGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 35529 0.69 0.631755
Target:  5'- cGCAcCGACGUUgGUGGCUGuGaucugCGAGCg -3'
miRNA:   3'- cCGUuGUUGCAA-CGCCGGC-Ca----GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 51558 0.69 0.631755
Target:  5'- cGGCAACGGCGUUcGCaaggguaaGGCgccuuCGGUauuccCGAGCa -3'
miRNA:   3'- -CCGUUGUUGCAA-CG--------CCG-----GCCA-----GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 32236 0.68 0.642685
Target:  5'- uGGUAGCGugGUaGUGGucagcgcccCCGGUCGuGUc -3'
miRNA:   3'- -CCGUUGUugCAaCGCC---------GGCCAGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 29216 0.68 0.654696
Target:  5'- cGGCAGCAcuACgGUgcgcucaccaagacgGCGGCUGuUCGGGCc -3'
miRNA:   3'- -CCGUUGU--UG-CAa--------------CGCCGGCcAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 14797 0.68 0.664505
Target:  5'- cGCGGCGAagaacGCGGCCGGcaUCG-GCa -3'
miRNA:   3'- cCGUUGUUgcaa-CGCCGGCC--AGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 35036 0.68 0.686206
Target:  5'- cGGCGGCAGCa--GCGGCCugaucGUCGucGCu -3'
miRNA:   3'- -CCGUUGUUGcaaCGCCGGc----CAGCu-CG- -5'
12416 3' -54.6 NC_003324.1 + 14578 0.68 0.686206
Target:  5'- cGGCcugcCGGCGcaaGCGGCCGG-CG-GCg -3'
miRNA:   3'- -CCGuu--GUUGCaa-CGCCGGCCaGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 9652 0.7 0.555767
Target:  5'- cGGCAACGccaacGCGcuggGCGGCgUGGggcCGGGCg -3'
miRNA:   3'- -CCGUUGU-----UGCaa--CGCCG-GCCa--GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 43004 0.7 0.545088
Target:  5'- gGGuCGGCAACGgagaacCGGCCGGUagugGGGCc -3'
miRNA:   3'- -CC-GUUGUUGCaac---GCCGGCCAg---CUCG- -5'
12416 3' -54.6 NC_003324.1 + 23528 0.7 0.544024
Target:  5'- cGGCAcgaucggugccccACAGCGUgGCGGCgGG-CGcGCu -3'
miRNA:   3'- -CCGU-------------UGUUGCAaCGCCGgCCaGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 27065 0.77 0.236818
Target:  5'- cGCGGCGuuacCGUUGUGGCCGGUgCG-GCu -3'
miRNA:   3'- cCGUUGUu---GCAACGCCGGCCA-GCuCG- -5'
12416 3' -54.6 NC_003324.1 + 14608 0.76 0.276028
Target:  5'- aGGCggUAGCGUgGCGGCCGG---AGCu -3'
miRNA:   3'- -CCGuuGUUGCAaCGCCGGCCagcUCG- -5'
12416 3' -54.6 NC_003324.1 + 18424 0.75 0.307963
Target:  5'- aGGCGACGcuggucauggucugcGCGaccUUGCcGCCGGUCGGGUu -3'
miRNA:   3'- -CCGUUGU---------------UGC---AACGcCGGCCAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 39386 0.73 0.387146
Target:  5'- aGCAGCuuGCGcUGCGGCUcGUUGGGCu -3'
miRNA:   3'- cCGUUGu-UGCaACGCCGGcCAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 37355 0.72 0.414493
Target:  5'- cGGCGAUuguCGUa-CuGCCGGUCGAGCu -3'
miRNA:   3'- -CCGUUGuu-GCAacGcCGGCCAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 23783 0.72 0.433372
Target:  5'- cGGCGGC-GCGUU-CGGCCucGG-CGAGCu -3'
miRNA:   3'- -CCGUUGuUGCAAcGCCGG--CCaGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 23748 0.72 0.45274
Target:  5'- aGCuGCGACGUUGC-GCCGGaaaUCGGGg -3'
miRNA:   3'- cCGuUGUUGCAACGcCGGCC---AGCUCg -5'
12416 3' -54.6 NC_003324.1 + 23150 0.71 0.486711
Target:  5'- uGGCGGCaAACGUcuUGCcggcgcccacgguauGGUCGG-CGAGCg -3'
miRNA:   3'- -CCGUUG-UUGCA--ACG---------------CCGGCCaGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.