miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12416 3' -54.6 NC_003324.1 + 1276 0.67 0.749729
Target:  5'- --uGACGACGUUcggaucGCGGCCGGauuUC-AGCg -3'
miRNA:   3'- ccgUUGUUGCAA------CGCCGGCC---AGcUCG- -5'
12416 3' -54.6 NC_003324.1 + 3159 0.66 0.799528
Target:  5'- uGGCAAgAGCGggagcgccgUGCGGCCa-UUGAGa -3'
miRNA:   3'- -CCGUUgUUGCa--------ACGCCGGccAGCUCg -5'
12416 3' -54.6 NC_003324.1 + 4697 0.67 0.718346
Target:  5'- cGCAACAACGaccaggGCGGCUGGcUgGAa- -3'
miRNA:   3'- cCGUUGUUGCaa----CGCCGGCC-AgCUcg -5'
12416 3' -54.6 NC_003324.1 + 4852 1.13 0.000688
Target:  5'- cGGCAACAACGUUGCGGCCGGUCGAGCc -3'
miRNA:   3'- -CCGUUGUUGCAACGCCGGCCAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 4927 0.69 0.577298
Target:  5'- cGGCcGCAACGUUGuuGCCGG-CGccauAGUc -3'
miRNA:   3'- -CCGuUGUUGCAACgcCGGCCaGC----UCG- -5'
12416 3' -54.6 NC_003324.1 + 5619 0.71 0.513481
Target:  5'- cGGCGGCAACcgggaacUUGauGCCGaUCGAGCg -3'
miRNA:   3'- -CCGUUGUUGc------AACgcCGGCcAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 7508 0.68 0.653604
Target:  5'- gGGCAGCAGCacccUUGCcaaucuccGuGCCccauuGGUCGAGCa -3'
miRNA:   3'- -CCGUUGUUGc---AACG--------C-CGG-----CCAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 9652 0.7 0.555767
Target:  5'- cGGCAACGccaacGCGcuggGCGGCgUGGggcCGGGCg -3'
miRNA:   3'- -CCGUUGU-----UGCaa--CGCCG-GCCa--GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 13170 0.67 0.749729
Target:  5'- aGGCu---GCGUcgGCGG-CGGUCG-GCg -3'
miRNA:   3'- -CCGuuguUGCAa-CGCCgGCCAGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 13433 0.73 0.387146
Target:  5'- cGGCAGCGcgucgcAUGUUugguccggcGCGGCUGccGUCGAGCa -3'
miRNA:   3'- -CCGUUGU------UGCAA---------CGCCGGC--CAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 14578 0.68 0.686206
Target:  5'- cGGCcugcCGGCGcaaGCGGCCGG-CG-GCg -3'
miRNA:   3'- -CCGuu--GUUGCaa-CGCCGGCCaGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 14608 0.76 0.276028
Target:  5'- aGGCggUAGCGUgGCGGCCGG---AGCu -3'
miRNA:   3'- -CCGuuGUUGCAaCGCCGGCCagcUCG- -5'
12416 3' -54.6 NC_003324.1 + 14797 0.68 0.664505
Target:  5'- cGCGGCGAagaacGCGGCCGGcaUCG-GCa -3'
miRNA:   3'- cCGUUGUUgcaa-CGCCGGCC--AGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 15224 0.66 0.78987
Target:  5'- cGGCGGCGagccuuuucACGUgGC-GCCGuGUCGAcGCc -3'
miRNA:   3'- -CCGUUGU---------UGCAaCGcCGGC-CAGCU-CG- -5'
12416 3' -54.6 NC_003324.1 + 16339 0.67 0.749729
Target:  5'- cGCGACGGCGUUGCcGUCGaUCGcGUc -3'
miRNA:   3'- cCGUUGUUGCAACGcCGGCcAGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 18424 0.75 0.307963
Target:  5'- aGGCGACGcuggucauggucugcGCGaccUUGCcGCCGGUCGGGUu -3'
miRNA:   3'- -CCGUUGU---------------UGC---AACGcCGGCCAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 18681 0.67 0.707702
Target:  5'- uGGaugaAGCGcuuGCG-UGCGGaaaGGUCGGGCa -3'
miRNA:   3'- -CCg---UUGU---UGCaACGCCgg-CCAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 18793 0.7 0.566506
Target:  5'- cGGCAACGaugcgcggguccAUGgcGCGGCgaaGGUCG-GCg -3'
miRNA:   3'- -CCGUUGU------------UGCaaCGCCGg--CCAGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 19003 0.67 0.739371
Target:  5'- cGGCGGCuGCac-GCGGCUGGccUCGAacGCg -3'
miRNA:   3'- -CCGUUGuUGcaaCGCCGGCC--AGCU--CG- -5'
12416 3' -54.6 NC_003324.1 + 19488 0.67 0.696985
Target:  5'- gGGCGAUAGCGUcgGCG-UCGG-CGuGCu -3'
miRNA:   3'- -CCGUUGUUGCAa-CGCcGGCCaGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.