Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12416 | 3' | -54.6 | NC_003324.1 | + | 4852 | 1.13 | 0.000688 |
Target: 5'- cGGCAACAACGUUGCGGCCGGUCGAGCc -3' miRNA: 3'- -CCGUUGUUGCAACGCCGGCCAGCUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 27065 | 0.77 | 0.236818 |
Target: 5'- cGCGGCGuuacCGUUGUGGCCGGUgCG-GCu -3' miRNA: 3'- cCGUUGUu---GCAACGCCGGCCA-GCuCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 20609 | 0.76 | 0.255808 |
Target: 5'- cGGCgcugAugGGCGcUUGCGGUCGG-CGGGCa -3' miRNA: 3'- -CCG----UugUUGC-AACGCCGGCCaGCUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 14608 | 0.76 | 0.276028 |
Target: 5'- aGGCggUAGCGUgGCGGCCGG---AGCu -3' miRNA: 3'- -CCGuuGUUGCAaCGCCGGCCagcUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 18424 | 0.75 | 0.307963 |
Target: 5'- aGGCGACGcuggucauggucugcGCGaccUUGCcGCCGGUCGGGUu -3' miRNA: 3'- -CCGUUGU---------------UGC---AACGcCGGCCAGCUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 13433 | 0.73 | 0.387146 |
Target: 5'- cGGCAGCGcgucgcAUGUUugguccggcGCGGCUGccGUCGAGCa -3' miRNA: 3'- -CCGUUGU------UGCAA---------CGCCGGC--CAGCUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 39386 | 0.73 | 0.387146 |
Target: 5'- aGCAGCuuGCGcUGCGGCUcGUUGGGCu -3' miRNA: 3'- cCGUUGu-UGCaACGCCGGcCAGCUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 27879 | 0.73 | 0.39976 |
Target: 5'- cGGCGccaucaguccgACGACGUugggcgaguucaaagUGUGGCUGGguUCGGGCa -3' miRNA: 3'- -CCGU-----------UGUUGCA---------------ACGCCGGCC--AGCUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 37355 | 0.72 | 0.414493 |
Target: 5'- cGGCGAUuguCGUa-CuGCCGGUCGAGCu -3' miRNA: 3'- -CCGUUGuu-GCAacGcCGGCCAGCUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 23783 | 0.72 | 0.433372 |
Target: 5'- cGGCGGC-GCGUU-CGGCCucGG-CGAGCu -3' miRNA: 3'- -CCGUUGuUGCAAcGCCGG--CCaGCUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 23748 | 0.72 | 0.45274 |
Target: 5'- aGCuGCGACGUUGC-GCCGGaaaUCGGGg -3' miRNA: 3'- cCGuUGUUGCAACGcCGGCC---AGCUCg -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 23150 | 0.71 | 0.486711 |
Target: 5'- uGGCGGCaAACGUcuUGCcggcgcccacgguauGGUCGG-CGAGCg -3' miRNA: 3'- -CCGUUG-UUGCA--ACG---------------CCGGCCaGCUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 5619 | 0.71 | 0.513481 |
Target: 5'- cGGCGGCAACcgggaacUUGauGCCGaUCGAGCg -3' miRNA: 3'- -CCGUUGUUGc------AACgcCGGCcAGCUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 31332 | 0.7 | 0.523939 |
Target: 5'- cGCAAaAACGcgcagUGCGGCCGG-CG-GCg -3' miRNA: 3'- cCGUUgUUGCa----ACGCCGGCCaGCuCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 21374 | 0.7 | 0.528145 |
Target: 5'- cGGCGagGCGGCGaacGCGGCCGaGaugaaagcggcagcgUCGGGCa -3' miRNA: 3'- -CCGU--UGUUGCaa-CGCCGGC-C---------------AGCUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 23528 | 0.7 | 0.544024 |
Target: 5'- cGGCAcgaucggugccccACAGCGUgGCGGCgGG-CGcGCu -3' miRNA: 3'- -CCGU-------------UGUUGCAaCGCCGgCCaGCuCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 40379 | 0.7 | 0.545088 |
Target: 5'- gGGCAGCAACGUUaaGGCgaaGGUCaagaaGGCa -3' miRNA: 3'- -CCGUUGUUGCAAcgCCGg--CCAGc----UCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 43004 | 0.7 | 0.545088 |
Target: 5'- gGGuCGGCAACGgagaacCGGCCGGUagugGGGCc -3' miRNA: 3'- -CC-GUUGUUGCaac---GCCGGCCAg---CUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 9652 | 0.7 | 0.555767 |
Target: 5'- cGGCAACGccaacGCGcuggGCGGCgUGGggcCGGGCg -3' miRNA: 3'- -CCGUUGU-----UGCaa--CGCCG-GCCa--GCUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 18793 | 0.7 | 0.566506 |
Target: 5'- cGGCAACGaugcgcggguccAUGgcGCGGCgaaGGUCG-GCg -3' miRNA: 3'- -CCGUUGU------------UGCaaCGCCGg--CCAGCuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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