miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12416 3' -54.6 NC_003324.1 + 57378 0.66 0.799528
Target:  5'- cGGCGGaGGCGaggGCGGCaCGaccggcGUUGAGCa -3'
miRNA:   3'- -CCGUUgUUGCaa-CGCCG-GC------CAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 56655 0.68 0.660148
Target:  5'- aGCGAUAGCGgcguuaugggcgGCGGCaUGGgucgCGGGCa -3'
miRNA:   3'- cCGUUGUUGCaa----------CGCCG-GCCa---GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 55150 0.67 0.748698
Target:  5'- cGGCAACGGCuacaucugGCugacacaGGCCGGaUGGGCu -3'
miRNA:   3'- -CCGUUGUUGcaa-----CG-------CCGGCCaGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 54345 0.66 0.77008
Target:  5'- cGGCu-CGGCGcUGauGCCGGUCcauGGCa -3'
miRNA:   3'- -CCGuuGUUGCaACgcCGGCCAGc--UCG- -5'
12416 3' -54.6 NC_003324.1 + 53695 0.67 0.718346
Target:  5'- cGGCGACGuuCGUcGCGcaGCUcGUCGAGUg -3'
miRNA:   3'- -CCGUUGUu-GCAaCGC--CGGcCAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 53291 0.67 0.728906
Target:  5'- cGCAGCuuuCGUUGUGaaGCCGGcCGccAGCu -3'
miRNA:   3'- cCGUUGuu-GCAACGC--CGGCCaGC--UCG- -5'
12416 3' -54.6 NC_003324.1 + 51558 0.69 0.631755
Target:  5'- cGGCAACGGCGUUcGCaaggguaaGGCgccuuCGGUauuccCGAGCa -3'
miRNA:   3'- -CCGUUGUUGCAA-CG--------CCG-----GCCA-----GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 50251 0.67 0.733104
Target:  5'- aGGCGAaagcccGCGUcgagaaagagaaugaUGCGccGCCGGUCGAcgGCa -3'
miRNA:   3'- -CCGUUgu----UGCA---------------ACGC--CGGCCAGCU--CG- -5'
12416 3' -54.6 NC_003324.1 + 49862 0.67 0.739371
Target:  5'- aGGCGGaguACGgcaaGUGaGCCGG-CGGGCa -3'
miRNA:   3'- -CCGUUgu-UGCaa--CGC-CGGCCaGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 48723 0.69 0.608816
Target:  5'- uGGCucaugccGAUGAUGUUGCGGCggagcCGGaugCGGGCg -3'
miRNA:   3'- -CCG-------UUGUUGCAACGCCG-----GCCa--GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 48454 0.67 0.728906
Target:  5'- aGGCGccaaggGCAAC--UGCGaGCCGGcuuggagugCGAGCa -3'
miRNA:   3'- -CCGU------UGUUGcaACGC-CGGCCa--------GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 47728 0.67 0.707702
Target:  5'- cGGCGugccacagcuCGACGaugGCGGCCcGGUCGccgucaugcgcGGCg -3'
miRNA:   3'- -CCGUu---------GUUGCaa-CGCCGG-CCAGC-----------UCG- -5'
12416 3' -54.6 NC_003324.1 + 45217 0.66 0.799528
Target:  5'- aGGCA-CAuCGUUGUugauacgccGGCagCGGUCGAGa -3'
miRNA:   3'- -CCGUuGUuGCAACG---------CCG--GCCAGCUCg -5'
12416 3' -54.6 NC_003324.1 + 43004 0.7 0.545088
Target:  5'- gGGuCGGCAACGgagaacCGGCCGGUagugGGGCc -3'
miRNA:   3'- -CC-GUUGUUGCaac---GCCGGCCAg---CUCG- -5'
12416 3' -54.6 NC_003324.1 + 40592 0.66 0.780051
Target:  5'- -cCGAUGugGUUGUGGuCCGGUUcgcugGGGCc -3'
miRNA:   3'- ccGUUGUugCAACGCC-GGCCAG-----CUCG- -5'
12416 3' -54.6 NC_003324.1 + 40496 0.67 0.725748
Target:  5'- aGGCGACGACGaagcGCcagacgaaggcgaaGGCCGGU-GAGg -3'
miRNA:   3'- -CCGUUGUUGCaa--CG--------------CCGGCCAgCUCg -5'
12416 3' -54.6 NC_003324.1 + 40379 0.7 0.545088
Target:  5'- gGGCAGCAACGUUaaGGCgaaGGUCaagaaGGCa -3'
miRNA:   3'- -CCGUUGUUGCAAcgCCGg--CCAGc----UCG- -5'
12416 3' -54.6 NC_003324.1 + 40126 0.67 0.696985
Target:  5'- cGCAACuACGgugGaCGGCCGa-CGAGCu -3'
miRNA:   3'- cCGUUGuUGCaa-C-GCCGGCcaGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 39953 0.67 0.728906
Target:  5'- cGGCAAgGAa---GCGGCCgacaagaaGGUCGAGg -3'
miRNA:   3'- -CCGUUgUUgcaaCGCCGG--------CCAGCUCg -5'
12416 3' -54.6 NC_003324.1 + 39386 0.73 0.387146
Target:  5'- aGCAGCuuGCGcUGCGGCUcGUUGGGCu -3'
miRNA:   3'- cCGUUGu-UGCaACGCCGGcCAGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.