miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12416 3' -54.6 NC_003324.1 + 37355 0.72 0.414493
Target:  5'- cGGCGAUuguCGUa-CuGCCGGUCGAGCu -3'
miRNA:   3'- -CCGUUGuu-GCAacGcCGGCCAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 35529 0.69 0.631755
Target:  5'- cGCAcCGACGUUgGUGGCUGuGaucugCGAGCg -3'
miRNA:   3'- cCGUuGUUGCAA-CGCCGGC-Ca----GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 35480 0.66 0.759969
Target:  5'- gGGCGAgGAaaccaugcGCGGgCGGcCGAGCa -3'
miRNA:   3'- -CCGUUgUUgcaa----CGCCgGCCaGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 35036 0.68 0.686206
Target:  5'- cGGCGGCAGCa--GCGGCCugaucGUCGucGCu -3'
miRNA:   3'- -CCGUUGUUGcaaCGCCGGc----CAGCu-CG- -5'
12416 3' -54.6 NC_003324.1 + 32236 0.68 0.642685
Target:  5'- uGGUAGCGugGUaGUGGucagcgcccCCGGUCGuGUc -3'
miRNA:   3'- -CCGUUGUugCAaCGCC---------GGCCAGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 31332 0.7 0.523939
Target:  5'- cGCAAaAACGcgcagUGCGGCCGG-CG-GCg -3'
miRNA:   3'- cCGUUgUUGCa----ACGCCGGCCaGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 31027 0.67 0.696985
Target:  5'- uGGUAGCGAC----CGGCgCGGUCG-GCg -3'
miRNA:   3'- -CCGUUGUUGcaacGCCG-GCCAGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 30614 0.66 0.75691
Target:  5'- cGCGucGCAGCGgcaGCGGCagcgaaggucgccaCGGUCGcaGGCg -3'
miRNA:   3'- cCGU--UGUUGCaa-CGCCG--------------GCCAGC--UCG- -5'
12416 3' -54.6 NC_003324.1 + 30088 0.68 0.686206
Target:  5'- cGCAGCAucGCGUcgccagagUGCaccGGCCGGgaUCGAuGCg -3'
miRNA:   3'- cCGUUGU--UGCA--------ACG---CCGGCC--AGCU-CG- -5'
12416 3' -54.6 NC_003324.1 + 29714 0.69 0.609907
Target:  5'- aGGCGGCGGCGUUGCGccagaaGCaGG-CaGAGCc -3'
miRNA:   3'- -CCGUUGUUGCAACGC------CGgCCaG-CUCG- -5'
12416 3' -54.6 NC_003324.1 + 29549 0.66 0.798569
Target:  5'- cGCGcccGCAGCcagGCGGCCGugucaucGUCGAGg -3'
miRNA:   3'- cCGU---UGUUGcaaCGCCGGC-------CAGCUCg -5'
12416 3' -54.6 NC_003324.1 + 29472 0.66 0.780051
Target:  5'- cGGCcGCcuGGC--UGCGGgCGcGUCGGGCg -3'
miRNA:   3'- -CCGuUG--UUGcaACGCCgGC-CAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 29216 0.68 0.654696
Target:  5'- cGGCAGCAcuACgGUgcgcucaccaagacgGCGGCUGuUCGGGCc -3'
miRNA:   3'- -CCGUUGU--UG-CAa--------------CGCCGGCcAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 27879 0.73 0.39976
Target:  5'- cGGCGccaucaguccgACGACGUugggcgaguucaaagUGUGGCUGGguUCGGGCa -3'
miRNA:   3'- -CCGU-----------UGUUGCA---------------ACGCCGGCC--AGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 27065 0.77 0.236818
Target:  5'- cGCGGCGuuacCGUUGUGGCCGGUgCG-GCu -3'
miRNA:   3'- cCGUUGUu---GCAACGCCGGCCA-GCuCG- -5'
12416 3' -54.6 NC_003324.1 + 25533 0.67 0.749729
Target:  5'- uGGCGGCGACGUUGCc-CCGGaauuUCGccuucuGGCc -3'
miRNA:   3'- -CCGUUGUUGCAACGccGGCC----AGC------UCG- -5'
12416 3' -54.6 NC_003324.1 + 23783 0.72 0.433372
Target:  5'- cGGCGGC-GCGUU-CGGCCucGG-CGAGCu -3'
miRNA:   3'- -CCGUUGuUGCAAcGCCGG--CCaGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 23748 0.72 0.45274
Target:  5'- aGCuGCGACGUUGC-GCCGGaaaUCGGGg -3'
miRNA:   3'- cCGuUGUUGCAACGcCGGCC---AGCUCg -5'
12416 3' -54.6 NC_003324.1 + 23528 0.7 0.544024
Target:  5'- cGGCAcgaucggugccccACAGCGUgGCGGCgGG-CGcGCu -3'
miRNA:   3'- -CCGU-------------UGUUGCAaCGCCGgCCaGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 23150 0.71 0.486711
Target:  5'- uGGCGGCaAACGUcuUGCcggcgcccacgguauGGUCGG-CGAGCg -3'
miRNA:   3'- -CCGUUG-UUGCA--ACG---------------CCGGCCaGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.