miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12417 3' -56.6 NC_003324.1 + 57137 0.67 0.633053
Target:  5'- gCUCGAaacccugcUGACGCCcCCgacugagugcgaaGCCAAGGGCCu -3'
miRNA:   3'- -GAGCUa-------GCUGUGGcGG-------------CGGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 38323 0.67 0.634128
Target:  5'- -gCGAUCGGCAuuCCGgCGCUgaaaGAGGAUUu -3'
miRNA:   3'- gaGCUAGCUGU--GGCgGCGG----UUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 15284 0.67 0.634128
Target:  5'- uUCGAgguuUCGuCcCCGCCGUCAcGGGCg -3'
miRNA:   3'- gAGCU----AGCuGuGGCGGCGGUuCCUGg -5'
12417 3' -56.6 NC_003324.1 + 38477 0.67 0.644873
Target:  5'- -gUGAUCGACgagGCCGaCCGCCu-GGugaaACCa -3'
miRNA:   3'- gaGCUAGCUG---UGGC-GGCGGuuCC----UGG- -5'
12417 3' -56.6 NC_003324.1 + 15101 0.67 0.644873
Target:  5'- -aUGAUCGACcuGCCGUCGCCuuu-GCCc -3'
miRNA:   3'- gaGCUAGCUG--UGGCGGCGGuuccUGG- -5'
12417 3' -56.6 NC_003324.1 + 29151 0.67 0.644873
Target:  5'- -aCGAguUCGGCGuguCCGUCGAGGACCu -3'
miRNA:   3'- gaGCU--AGCUGUggcGGCGGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 13416 0.66 0.655608
Target:  5'- uUUGGUcCGGCgcgGCUGCCGUCGAGcACCu -3'
miRNA:   3'- gAGCUA-GCUG---UGGCGGCGGUUCcUGG- -5'
12417 3' -56.6 NC_003324.1 + 26060 0.66 0.655608
Target:  5'- aUCGAUCuggucuggGGCGCCGaaggcaccaaCGCCAgcaauggucAGGGCCu -3'
miRNA:   3'- gAGCUAG--------CUGUGGCg---------GCGGU---------UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 52820 0.66 0.666321
Target:  5'- -cUGGUCGACAa--CCGCCAaacAGGACa -3'
miRNA:   3'- gaGCUAGCUGUggcGGCGGU---UCCUGg -5'
12417 3' -56.6 NC_003324.1 + 48268 0.66 0.666321
Target:  5'- uCUCGGagaaccagCGaACGCgGCCGaUAGGGACCa -3'
miRNA:   3'- -GAGCUa-------GC-UGUGgCGGCgGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 7323 0.66 0.666321
Target:  5'- -cCG-UCGuu-CCGCgCGCCGAGGGCa -3'
miRNA:   3'- gaGCuAGCuguGGCG-GCGGUUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 34719 0.66 0.677005
Target:  5'- gCUCu-UCGACauGCUGgaCGCCGAGGugCg -3'
miRNA:   3'- -GAGcuAGCUG--UGGCg-GCGGUUCCugG- -5'
12417 3' -56.6 NC_003324.1 + 32422 0.66 0.677005
Target:  5'- -cCGggCGAUGCCGCUaggcagGCCAugcAGGAUCc -3'
miRNA:   3'- gaGCuaGCUGUGGCGG------CGGU---UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 53395 0.66 0.677005
Target:  5'- uUUGAUCuGGCAUCGCgGUCAcGGcGCCu -3'
miRNA:   3'- gAGCUAG-CUGUGGCGgCGGUuCC-UGG- -5'
12417 3' -56.6 NC_003324.1 + 54413 0.66 0.677005
Target:  5'- aCUCcc-CGGgACCGCUGCC--GGGCCu -3'
miRNA:   3'- -GAGcuaGCUgUGGCGGCGGuuCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 31180 0.66 0.677005
Target:  5'- -cCGAgcagcagCG-CAUUGCCG-CAAGGACCg -3'
miRNA:   3'- gaGCUa------GCuGUGGCGGCgGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 25940 0.66 0.681267
Target:  5'- gUCGAUCGcgaucgcuccaccacGCGCCGCauccaGCUuGAGGACg -3'
miRNA:   3'- gAGCUAGC---------------UGUGGCGg----CGG-UUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 49506 0.66 0.687647
Target:  5'- --aGAUCagccaaGCGCCGCUGCCGGGcucGCCg -3'
miRNA:   3'- gagCUAGc-----UGUGGCGGCGGUUCc--UGG- -5'
12417 3' -56.6 NC_003324.1 + 22210 0.66 0.687647
Target:  5'- gUUGGUgGGCuuGCCGCCGCgCAccuucGGGAgCg -3'
miRNA:   3'- gAGCUAgCUG--UGGCGGCG-GU-----UCCUgG- -5'
12417 3' -56.6 NC_003324.1 + 49142 0.66 0.687647
Target:  5'- gCUCGAUUGAgGugaucaaCGUCGCCAccgaAGGcACCa -3'
miRNA:   3'- -GAGCUAGCUgUg------GCGGCGGU----UCC-UGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.