Results 61 - 80 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 57137 | 0.67 | 0.633053 |
Target: 5'- gCUCGAaacccugcUGACGCCcCCgacugagugcgaaGCCAAGGGCCu -3' miRNA: 3'- -GAGCUa-------GCUGUGGcGG-------------CGGUUCCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 15284 | 0.67 | 0.634128 |
Target: 5'- uUCGAgguuUCGuCcCCGCCGUCAcGGGCg -3' miRNA: 3'- gAGCU----AGCuGuGGCGGCGGUuCCUGg -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 38323 | 0.67 | 0.634128 |
Target: 5'- -gCGAUCGGCAuuCCGgCGCUgaaaGAGGAUUu -3' miRNA: 3'- gaGCUAGCUGU--GGCgGCGG----UUCCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 15101 | 0.67 | 0.644873 |
Target: 5'- -aUGAUCGACcuGCCGUCGCCuuu-GCCc -3' miRNA: 3'- gaGCUAGCUG--UGGCGGCGGuuccUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 29151 | 0.67 | 0.644873 |
Target: 5'- -aCGAguUCGGCGuguCCGUCGAGGACCu -3' miRNA: 3'- gaGCU--AGCUGUggcGGCGGUUCCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 38477 | 0.67 | 0.644873 |
Target: 5'- -gUGAUCGACgagGCCGaCCGCCu-GGugaaACCa -3' miRNA: 3'- gaGCUAGCUG---UGGC-GGCGGuuCC----UGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 26060 | 0.66 | 0.655608 |
Target: 5'- aUCGAUCuggucuggGGCGCCGaaggcaccaaCGCCAgcaauggucAGGGCCu -3' miRNA: 3'- gAGCUAG--------CUGUGGCg---------GCGGU---------UCCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 13416 | 0.66 | 0.655608 |
Target: 5'- uUUGGUcCGGCgcgGCUGCCGUCGAGcACCu -3' miRNA: 3'- gAGCUA-GCUG---UGGCGGCGGUUCcUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 52820 | 0.66 | 0.666321 |
Target: 5'- -cUGGUCGACAa--CCGCCAaacAGGACa -3' miRNA: 3'- gaGCUAGCUGUggcGGCGGU---UCCUGg -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 7323 | 0.66 | 0.666321 |
Target: 5'- -cCG-UCGuu-CCGCgCGCCGAGGGCa -3' miRNA: 3'- gaGCuAGCuguGGCG-GCGGUUCCUGg -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 48268 | 0.66 | 0.666321 |
Target: 5'- uCUCGGagaaccagCGaACGCgGCCGaUAGGGACCa -3' miRNA: 3'- -GAGCUa-------GC-UGUGgCGGCgGUUCCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 32422 | 0.66 | 0.677005 |
Target: 5'- -cCGggCGAUGCCGCUaggcagGCCAugcAGGAUCc -3' miRNA: 3'- gaGCuaGCUGUGGCGG------CGGU---UCCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 31180 | 0.66 | 0.677005 |
Target: 5'- -cCGAgcagcagCG-CAUUGCCG-CAAGGACCg -3' miRNA: 3'- gaGCUa------GCuGUGGCGGCgGUUCCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 34719 | 0.66 | 0.677005 |
Target: 5'- gCUCu-UCGACauGCUGgaCGCCGAGGugCg -3' miRNA: 3'- -GAGcuAGCUG--UGGCg-GCGGUUCCugG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 53395 | 0.66 | 0.677005 |
Target: 5'- uUUGAUCuGGCAUCGCgGUCAcGGcGCCu -3' miRNA: 3'- gAGCUAG-CUGUGGCGgCGGUuCC-UGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 54413 | 0.66 | 0.677005 |
Target: 5'- aCUCcc-CGGgACCGCUGCC--GGGCCu -3' miRNA: 3'- -GAGcuaGCUgUGGCGGCGGuuCCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 25940 | 0.66 | 0.681267 |
Target: 5'- gUCGAUCGcgaucgcuccaccacGCGCCGCauccaGCUuGAGGACg -3' miRNA: 3'- gAGCUAGC---------------UGUGGCGg----CGG-UUCCUGg -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 19380 | 0.66 | 0.687647 |
Target: 5'- aUgGAUCGACGCCGgCGCgCGucGcGCCg -3' miRNA: 3'- gAgCUAGCUGUGGCgGCG-GUucC-UGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 22210 | 0.66 | 0.687647 |
Target: 5'- gUUGGUgGGCuuGCCGCCGCgCAccuucGGGAgCg -3' miRNA: 3'- gAGCUAgCUG--UGGCGGCG-GU-----UCCUgG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 49506 | 0.66 | 0.687647 |
Target: 5'- --aGAUCagccaaGCGCCGCUGCCGGGcucGCCg -3' miRNA: 3'- gagCUAGc-----UGUGGCGGCGGUUCc--UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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