miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12417 3' -56.6 NC_003324.1 + 34500 0.7 0.44803
Target:  5'- gUCGGcCGACaucACCGauGCCGAGGACg -3'
miRNA:   3'- gAGCUaGCUG---UGGCggCGGUUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 34719 0.66 0.677005
Target:  5'- gCUCu-UCGACauGCUGgaCGCCGAGGugCg -3'
miRNA:   3'- -GAGcuAGCUG--UGGCg-GCGGUUCCugG- -5'
12417 3' -56.6 NC_003324.1 + 35118 0.71 0.37525
Target:  5'- gUCG-UCGccaGCGCCGUCGCCGuuGACCu -3'
miRNA:   3'- gAGCuAGC---UGUGGCGGCGGUucCUGG- -5'
12417 3' -56.6 NC_003324.1 + 36315 0.71 0.41064
Target:  5'- --aGAUCGACACCGaUCGCgAauuAGGACa -3'
miRNA:   3'- gagCUAGCUGUGGC-GGCGgU---UCCUGg -5'
12417 3' -56.6 NC_003324.1 + 36725 0.67 0.623381
Target:  5'- -cCGG-CGGCACCuUCGCCGGGGAa- -3'
miRNA:   3'- gaGCUaGCUGUGGcGGCGGUUCCUgg -5'
12417 3' -56.6 NC_003324.1 + 37639 0.67 0.612641
Target:  5'- --gGAUCGACAggagGUCGCCGAGGugguCCg -3'
miRNA:   3'- gagCUAGCUGUgg--CGGCGGUUCCu---GG- -5'
12417 3' -56.6 NC_003324.1 + 38323 0.67 0.634128
Target:  5'- -gCGAUCGGCAuuCCGgCGCUgaaaGAGGAUUu -3'
miRNA:   3'- gaGCUAGCUGU--GGCgGCGG----UUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 38477 0.67 0.644873
Target:  5'- -gUGAUCGACgagGCCGaCCGCCu-GGugaaACCa -3'
miRNA:   3'- gaGCUAGCUG---UGGC-GGCGGuuCC----UGG- -5'
12417 3' -56.6 NC_003324.1 + 39263 0.68 0.580552
Target:  5'- aUCGGUUGcCGCCGUggcugCGCCAgaAGGugCc -3'
miRNA:   3'- gAGCUAGCuGUGGCG-----GCGGU--UCCugG- -5'
12417 3' -56.6 NC_003324.1 + 42124 0.7 0.467419
Target:  5'- aCUCG-UCGccaAUGCCGCCGC-GGGGAUCa -3'
miRNA:   3'- -GAGCuAGC---UGUGGCGGCGgUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 43241 0.74 0.273083
Target:  5'- gCUCgGAUUGGCGCucgcucaacaagcuCGCCGUCGAGGACg -3'
miRNA:   3'- -GAG-CUAGCUGUG--------------GCGGCGGUUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 43356 0.7 0.435669
Target:  5'- gUCGG-CGAaauccuugagaaacUGCCGCUGCCAGGcGACCc -3'
miRNA:   3'- gAGCUaGCU--------------GUGGCGGCGGUUC-CUGG- -5'
12417 3' -56.6 NC_003324.1 + 45905 0.75 0.242719
Target:  5'- cCUCauUCGGCGCCGCCGCUucGGAa- -3'
miRNA:   3'- -GAGcuAGCUGUGGCGGCGGuuCCUgg -5'
12417 3' -56.6 NC_003324.1 + 47575 0.68 0.569927
Target:  5'- -cCGAUCGACcCuCGCCGUCGA--GCCg -3'
miRNA:   3'- gaGCUAGCUGuG-GCGGCGGUUccUGG- -5'
12417 3' -56.6 NC_003324.1 + 48268 0.66 0.666321
Target:  5'- uCUCGGagaaccagCGaACGCgGCCGaUAGGGACCa -3'
miRNA:   3'- -GAGCUa-------GC-UGUGgCGGCgGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 49142 0.66 0.687647
Target:  5'- gCUCGAUUGAgGugaucaaCGUCGCCAccgaAGGcACCa -3'
miRNA:   3'- -GAGCUAGCUgUg------GCGGCGGU----UCC-UGG- -5'
12417 3' -56.6 NC_003324.1 + 49431 0.69 0.507432
Target:  5'- aUCG-UCGACACCGCUGUu--GGcGCCg -3'
miRNA:   3'- gAGCuAGCUGUGGCGGCGguuCC-UGG- -5'
12417 3' -56.6 NC_003324.1 + 49506 0.66 0.687647
Target:  5'- --aGAUCagccaaGCGCCGCUGCCGGGcucGCCg -3'
miRNA:   3'- gagCUAGc-----UGUGGCGGCGGUUCc--UGG- -5'
12417 3' -56.6 NC_003324.1 + 49577 0.69 0.497286
Target:  5'- --aGAaCGGCACCGUCGUUGAGGcugACCa -3'
miRNA:   3'- gagCUaGCUGUGGCGGCGGUUCC---UGG- -5'
12417 3' -56.6 NC_003324.1 + 49595 0.66 0.702459
Target:  5'- gCUCGAUaCGGCcgagagugccagaauGCCGCCcucGUUgcGGACCg -3'
miRNA:   3'- -GAGCUA-GCUG---------------UGGCGG---CGGuuCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.