miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12417 3' -56.6 NC_003324.1 + 24632 0.66 0.697183
Target:  5'- -aCGAUcuucCGGCACUGCUcuccaagGCCAuccGGACCc -3'
miRNA:   3'- gaGCUA----GCUGUGGCGG-------CGGUu--CCUGG- -5'
12417 3' -56.6 NC_003324.1 + 25216 0.71 0.37525
Target:  5'- gCUCGAUCGcguCACCGgcggcaUCGCCAAGaACCu -3'
miRNA:   3'- -GAGCUAGCu--GUGGC------GGCGGUUCcUGG- -5'
12417 3' -56.6 NC_003324.1 + 25940 0.66 0.681267
Target:  5'- gUCGAUCGcgaucgcuccaccacGCGCCGCauccaGCUuGAGGACg -3'
miRNA:   3'- gAGCUAGC---------------UGUGGCGg----CGG-UUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 26060 0.66 0.655608
Target:  5'- aUCGAUCuggucuggGGCGCCGaaggcaccaaCGCCAgcaauggucAGGGCCu -3'
miRNA:   3'- gAGCUAG--------CUGUGGCg---------GCGGU---------UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 26682 0.7 0.45767
Target:  5'- --gGAUCGAUGCCGCUGUUGAGcGugCu -3'
miRNA:   3'- gagCUAGCUGUGGCGGCGGUUC-CugG- -5'
12417 3' -56.6 NC_003324.1 + 28118 0.7 0.467419
Target:  5'- uCUCGAUCGAgaUAUCcaacCCGCCAAGGcggaugcgGCCg -3'
miRNA:   3'- -GAGCUAGCU--GUGGc---GGCGGUUCC--------UGG- -5'
12417 3' -56.6 NC_003324.1 + 29151 0.67 0.644873
Target:  5'- -aCGAguUCGGCGuguCCGUCGAGGACCu -3'
miRNA:   3'- gaGCU--AGCUGUggcGGCGGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 29458 0.69 0.487231
Target:  5'- cCUCGAcgaUGACACgGCCGCCuggcugcGGGCg -3'
miRNA:   3'- -GAGCUa--GCUGUGgCGGCGGuu-----CCUGg -5'
12417 3' -56.6 NC_003324.1 + 29638 0.7 0.438504
Target:  5'- uCUgGcgCaACGCCGCCGCCugagccGGGAUCg -3'
miRNA:   3'- -GAgCuaGcUGUGGCGGCGGu-----UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 30054 0.72 0.341176
Target:  5'- aUCGAUgcggaccCGGCuGCCGCCGCUAcgcAGGACg -3'
miRNA:   3'- gAGCUA-------GCUG-UGGCGGCGGU---UCCUGg -5'
12417 3' -56.6 NC_003324.1 + 30068 0.66 0.698239
Target:  5'- -cCGGUcgCGACACCgGCCGCUgcGGcuuCCu -3'
miRNA:   3'- gaGCUA--GCUGUGG-CGGCGGuuCCu--GG- -5'
12417 3' -56.6 NC_003324.1 + 30476 0.72 0.326162
Target:  5'- gUCGaAUCGGCGCCGCCGagcAGGcCCu -3'
miRNA:   3'- gAGC-UAGCUGUGGCGGCgguUCCuGG- -5'
12417 3' -56.6 NC_003324.1 + 31180 0.66 0.677005
Target:  5'- -cCGAgcagcagCG-CAUUGCCG-CAAGGACCg -3'
miRNA:   3'- gaGCUa------GCuGUGGCGGCgGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 31463 0.77 0.173177
Target:  5'- uCUCGGUCGAauaGCUGCCGUCGcuguuGGGACg -3'
miRNA:   3'- -GAGCUAGCUg--UGGCGGCGGU-----UCCUGg -5'
12417 3' -56.6 NC_003324.1 + 32123 0.68 0.591218
Target:  5'- gCUCGGcCGugAgCCGCCGCCGGcaGACa -3'
miRNA:   3'- -GAGCUaGCugU-GGCGGCGGUUc-CUGg -5'
12417 3' -56.6 NC_003324.1 + 32422 0.66 0.677005
Target:  5'- -cCGggCGAUGCCGCUaggcagGCCAugcAGGAUCc -3'
miRNA:   3'- gaGCuaGCUGUGGCGG------CGGU---UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 32571 0.79 0.128812
Target:  5'- aUCG-UCGACACCGUgauCGCCGAGGcuGCCg -3'
miRNA:   3'- gAGCuAGCUGUGGCG---GCGGUUCC--UGG- -5'
12417 3' -56.6 NC_003324.1 + 33499 0.74 0.259805
Target:  5'- -gCGGuccUCGAUcCCGCCGCCAaacguaaugugcgaGGGGCCg -3'
miRNA:   3'- gaGCU---AGCUGuGGCGGCGGU--------------UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 33671 0.8 0.10341
Target:  5'- gCUCGAUaCGccuGCGCUGCCGCCAAGGcAUCa -3'
miRNA:   3'- -GAGCUA-GC---UGUGGCGGCGGUUCC-UGG- -5'
12417 3' -56.6 NC_003324.1 + 33820 0.68 0.566748
Target:  5'- aUCGAUUGcggcuuGCACgGCCGCCucgcggcaaucguaGAGGuCCa -3'
miRNA:   3'- gAGCUAGC------UGUGgCGGCGG--------------UUCCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.