miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12417 3' -56.6 NC_003324.1 + 26682 0.7 0.45767
Target:  5'- --gGAUCGAUGCCGCUGUUGAGcGugCu -3'
miRNA:   3'- gagCUAGCUGUGGCGGCGGUUC-CugG- -5'
12417 3' -56.6 NC_003324.1 + 29638 0.7 0.438504
Target:  5'- uCUgGcgCaACGCCGCCGCCugagccGGGAUCg -3'
miRNA:   3'- -GAgCuaGcUGUGGCGGCGGu-----UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 49973 0.7 0.429095
Target:  5'- -gCGAUCGGCGCUGCC-CUgauGGGGGCa -3'
miRNA:   3'- gaGCUAGCUGUGGCGGcGG---UUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 5531 0.71 0.423507
Target:  5'- gCUCGAUCGGCaucaaguucccgguuGCCGCCgcaaccuucGCCGcGGGCg -3'
miRNA:   3'- -GAGCUAGCUG---------------UGGCGG---------CGGUuCCUGg -5'
12417 3' -56.6 NC_003324.1 + 13066 0.71 0.383031
Target:  5'- -aCGAUuugcagcCGGUACCGCCGCCGccGACCg -3'
miRNA:   3'- gaGCUA-------GCUGUGGCGGCGGUucCUGG- -5'
12417 3' -56.6 NC_003324.1 + 18002 0.71 0.378695
Target:  5'- gUCGAUCG-CuucggauaccgauugGCCGgCGCCAcGGGCCa -3'
miRNA:   3'- gAGCUAGCuG---------------UGGCgGCGGUuCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 23864 0.68 0.591218
Target:  5'- gCUCGc-CGAgGCCgaacgcGCCGCCGAaucGGACCc -3'
miRNA:   3'- -GAGCuaGCUgUGG------CGGCGGUU---CCUGG- -5'
12417 3' -56.6 NC_003324.1 + 32123 0.68 0.591218
Target:  5'- gCUCGGcCGugAgCCGCCGCCGGcaGACa -3'
miRNA:   3'- -GAGCUaGCugU-GGCGGCGGUUc-CUGg -5'
12417 3' -56.6 NC_003324.1 + 39263 0.68 0.580552
Target:  5'- aUCGGUUGcCGCCGUggcugCGCCAgaAGGugCc -3'
miRNA:   3'- gAGCUAGCuGUGGCG-----GCGGU--UCCugG- -5'
12417 3' -56.6 NC_003324.1 + 1158 0.68 0.580552
Target:  5'- gUCGAagCGGUACCgcaGCCGCCA-GGACUu -3'
miRNA:   3'- gAGCUa-GCUGUGG---CGGCGGUuCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 17696 0.68 0.580552
Target:  5'- gCUCGG-CGGCAUCGUgcucaacggcgCGCCGGGGcACUa -3'
miRNA:   3'- -GAGCUaGCUGUGGCG-----------GCGGUUCC-UGG- -5'
12417 3' -56.6 NC_003324.1 + 15742 0.68 0.569927
Target:  5'- cCUUGAUCGcguCAUCGagcgCGCCG-GGGCCg -3'
miRNA:   3'- -GAGCUAGCu--GUGGCg---GCGGUuCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 5164 0.69 0.507432
Target:  5'- gUCGAUCG-CGCCGCUuaaGCUAucAGG-CCg -3'
miRNA:   3'- gAGCUAGCuGUGGCGG---CGGU--UCCuGG- -5'
12417 3' -56.6 NC_003324.1 + 49431 0.69 0.507432
Target:  5'- aUCG-UCGACACCGCUGUu--GGcGCCg -3'
miRNA:   3'- gAGCuAGCUGUGGCGGCGguuCC-UGG- -5'
12417 3' -56.6 NC_003324.1 + 22320 0.69 0.497286
Target:  5'- -gCGAUCGGCAagacgUUGCCGCUcccgAAGGugCg -3'
miRNA:   3'- gaGCUAGCUGU-----GGCGGCGG----UUCCugG- -5'
12417 3' -56.6 NC_003324.1 + 8280 0.69 0.487231
Target:  5'- gUCGAagugccaGGCGCgCGCCGCCGggcagugagcaGGGACUg -3'
miRNA:   3'- gAGCUag-----CUGUG-GCGGCGGU-----------UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 2800 0.69 0.487231
Target:  5'- -gCGAUCGGCuaucgcuuggagACUGCCGCCGccGACa -3'
miRNA:   3'- gaGCUAGCUG------------UGGCGGCGGUucCUGg -5'
12417 3' -56.6 NC_003324.1 + 34500 0.7 0.44803
Target:  5'- gUCGGcCGACaucACCGauGCCGAGGACg -3'
miRNA:   3'- gAGCUaGCUG---UGGCggCGGUUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 21960 0.7 0.447073
Target:  5'- aUCGAccugUCGACcCCgaagaaggccaagGCCGCCGAGGAggcCCg -3'
miRNA:   3'- gAGCU----AGCUGuGG-------------CGGCGGUUCCU---GG- -5'
12417 3' -56.6 NC_003324.1 + 43356 0.7 0.435669
Target:  5'- gUCGG-CGAaauccuugagaaacUGCCGCUGCCAGGcGACCc -3'
miRNA:   3'- gAGCUaGCU--------------GUGGCGGCGGUUC-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.