miRNA display CGI


Results 21 - 40 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12417 3' -56.6 NC_003324.1 + 38477 0.67 0.644873
Target:  5'- -gUGAUCGACgagGCCGaCCGCCu-GGugaaACCa -3'
miRNA:   3'- gaGCUAGCUG---UGGC-GGCGGuuCC----UGG- -5'
12417 3' -56.6 NC_003324.1 + 2400 0.66 0.70877
Target:  5'- -aCGAUgaUGACACCGCCaacGCCGAuGAUg -3'
miRNA:   3'- gaGCUA--GCUGUGGCGG---CGGUUcCUGg -5'
12417 3' -56.6 NC_003324.1 + 30068 0.66 0.698239
Target:  5'- -cCGGUcgCGACACCgGCCGCUgcGGcuuCCu -3'
miRNA:   3'- gaGCUA--GCUGUGG-CGGCGGuuCCu--GG- -5'
12417 3' -56.6 NC_003324.1 + 19380 0.66 0.687647
Target:  5'- aUgGAUCGACGCCGgCGCgCGucGcGCCg -3'
miRNA:   3'- gAgCUAGCUGUGGCgGCG-GUucC-UGG- -5'
12417 3' -56.6 NC_003324.1 + 49142 0.66 0.687647
Target:  5'- gCUCGAUUGAgGugaucaaCGUCGCCAccgaAGGcACCa -3'
miRNA:   3'- -GAGCUAGCUgUg------GCGGCGGU----UCC-UGG- -5'
12417 3' -56.6 NC_003324.1 + 22210 0.66 0.687647
Target:  5'- gUUGGUgGGCuuGCCGCCGCgCAccuucGGGAgCg -3'
miRNA:   3'- gAGCUAgCUG--UGGCGGCG-GU-----UCCUgG- -5'
12417 3' -56.6 NC_003324.1 + 53395 0.66 0.677005
Target:  5'- uUUGAUCuGGCAUCGCgGUCAcGGcGCCu -3'
miRNA:   3'- gAGCUAG-CUGUGGCGgCGGUuCC-UGG- -5'
12417 3' -56.6 NC_003324.1 + 54413 0.66 0.677005
Target:  5'- aCUCcc-CGGgACCGCUGCC--GGGCCu -3'
miRNA:   3'- -GAGcuaGCUgUGGCGGCGGuuCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 52820 0.66 0.666321
Target:  5'- -cUGGUCGACAa--CCGCCAaacAGGACa -3'
miRNA:   3'- gaGCUAGCUGUggcGGCGGU---UCCUGg -5'
12417 3' -56.6 NC_003324.1 + 7323 0.66 0.666321
Target:  5'- -cCG-UCGuu-CCGCgCGCCGAGGGCa -3'
miRNA:   3'- gaGCuAGCuguGGCG-GCGGUUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 8647 0.8 0.102555
Target:  5'- aUCGAUCgcaccgacuucuccGACACCGCCGCCAAgaucuGGAUCu -3'
miRNA:   3'- gAGCUAG--------------CUGUGGCGGCGGUU-----CCUGG- -5'
12417 3' -56.6 NC_003324.1 + 17749 0.67 0.633053
Target:  5'- -cCGAUUG-UGCCGgugacacCCGCCAucAGGGCCa -3'
miRNA:   3'- gaGCUAGCuGUGGC-------GGCGGU--UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 57137 0.67 0.633053
Target:  5'- gCUCGAaacccugcUGACGCCcCCgacugagugcgaaGCCAAGGGCCu -3'
miRNA:   3'- -GAGCUa-------GCUGUGGcGG-------------CGGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 51722 0.67 0.623381
Target:  5'- -gCGAggcCGACGCaaUCGCCGAGGGCg -3'
miRNA:   3'- gaGCUa--GCUGUGgcGGCGGUUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 37639 0.67 0.612641
Target:  5'- --gGAUCGACAggagGUCGCCGAGGugguCCg -3'
miRNA:   3'- gagCUAGCUGUgg--CGGCGGUUCCu---GG- -5'
12417 3' -56.6 NC_003324.1 + 15432 0.68 0.591218
Target:  5'- aCUCGAgggagcaguUUGACGCgaagGuuGCCAGGGGCg -3'
miRNA:   3'- -GAGCU---------AGCUGUGg---CggCGGUUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 47575 0.68 0.569927
Target:  5'- -cCGAUCGACcCuCGCCGUCGA--GCCg -3'
miRNA:   3'- gaGCUAGCUGuG-GCGGCGGUUccUGG- -5'
12417 3' -56.6 NC_003324.1 + 18316 0.68 0.569927
Target:  5'- cCUUGGU-GAgACCGCCaaagcgggcGCCGAGGAUUg -3'
miRNA:   3'- -GAGCUAgCUgUGGCGG---------CGGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 33820 0.68 0.566748
Target:  5'- aUCGAUUGcggcuuGCACgGCCGCCucgcggcaaucguaGAGGuCCa -3'
miRNA:   3'- gAGCUAGC------UGUGgCGGCGG--------------UUCCuGG- -5'
12417 3' -56.6 NC_003324.1 + 17619 0.68 0.548828
Target:  5'- gUUGAgcaCGAUGCCGCCGagcucgggcCCGAGGAUa -3'
miRNA:   3'- gAGCUa--GCUGUGGCGGC---------GGUUCCUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.