miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12417 3' -56.6 NC_003324.1 + 23864 0.68 0.591218
Target:  5'- gCUCGc-CGAgGCCgaacgcGCCGCCGAaucGGACCc -3'
miRNA:   3'- -GAGCuaGCUgUGG------CGGCGGUU---CCUGG- -5'
12417 3' -56.6 NC_003324.1 + 6823 0.67 0.630904
Target:  5'- uCUgGAUCGGCGCCGuuGgCCAccuuuaccgaugucGGGAg- -3'
miRNA:   3'- -GAgCUAGCUGUGGCggC-GGU--------------UCCUgg -5'
12417 3' -56.6 NC_003324.1 + 31180 0.66 0.677005
Target:  5'- -cCGAgcagcagCG-CAUUGCCG-CAAGGACCg -3'
miRNA:   3'- gaGCUa------GCuGUGGCGGCgGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 49595 0.66 0.702459
Target:  5'- gCUCGAUaCGGCcgagagugccagaauGCCGCCcucGUUgcGGACCg -3'
miRNA:   3'- -GAGCUA-GCUG---------------UGGCGG---CGGuuCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 21960 0.7 0.447073
Target:  5'- aUCGAccugUCGACcCCgaagaaggccaagGCCGCCGAGGAggcCCg -3'
miRNA:   3'- gAGCU----AGCUGuGG-------------CGGCGGUUCCU---GG- -5'
12417 3' -56.6 NC_003324.1 + 15742 0.68 0.569927
Target:  5'- cCUUGAUCGcguCAUCGagcgCGCCG-GGGCCg -3'
miRNA:   3'- -GAGCUAGCu--GUGGCg---GCGGUuCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 15284 0.67 0.634128
Target:  5'- uUCGAgguuUCGuCcCCGCCGUCAcGGGCg -3'
miRNA:   3'- gAGCU----AGCuGuGGCGGCGGUuCCUGg -5'
12417 3' -56.6 NC_003324.1 + 19393 0.66 0.70877
Target:  5'- gCUCcg-CGAgCGCUacauggcuauGCCGcCCAAGGGCCg -3'
miRNA:   3'- -GAGcuaGCU-GUGG----------CGGC-GGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 17696 0.68 0.580552
Target:  5'- gCUCGG-CGGCAUCGUgcucaacggcgCGCCGGGGcACUa -3'
miRNA:   3'- -GAGCUaGCUGUGGCG-----------GCGGUUCC-UGG- -5'
12417 3' -56.6 NC_003324.1 + 22181 0.66 0.70877
Target:  5'- gCUCGAUCGuC-UgGCgCGCCGAGaACCu -3'
miRNA:   3'- -GAGCUAGCuGuGgCG-GCGGUUCcUGG- -5'
12417 3' -56.6 NC_003324.1 + 38323 0.67 0.634128
Target:  5'- -gCGAUCGGCAuuCCGgCGCUgaaaGAGGAUUu -3'
miRNA:   3'- gaGCUAGCUGU--GGCgGCGG----UUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 32123 0.68 0.591218
Target:  5'- gCUCGGcCGugAgCCGCCGCCGGcaGACa -3'
miRNA:   3'- -GAGCUaGCugU-GGCGGCGGUUc-CUGg -5'
12417 3' -56.6 NC_003324.1 + 13416 0.66 0.655608
Target:  5'- uUUGGUcCGGCgcgGCUGCCGUCGAGcACCu -3'
miRNA:   3'- gAGCUA-GCUG---UGGCGGCGGUUCcUGG- -5'
12417 3' -56.6 NC_003324.1 + 34719 0.66 0.677005
Target:  5'- gCUCu-UCGACauGCUGgaCGCCGAGGugCg -3'
miRNA:   3'- -GAGcuAGCUG--UGGCg-GCGGUUCCugG- -5'
12417 3' -56.6 NC_003324.1 + 49506 0.66 0.687647
Target:  5'- --aGAUCagccaaGCGCCGCUGCCGGGcucGCCg -3'
miRNA:   3'- gagCUAGc-----UGUGGCGGCGGUUCc--UGG- -5'
12417 3' -56.6 NC_003324.1 + 23626 0.66 0.698239
Target:  5'- -cCGAgCG-CGcCCGCCGCCAcgcuguGGGGCa -3'
miRNA:   3'- gaGCUaGCuGU-GGCGGCGGU------UCCUGg -5'
12417 3' -56.6 NC_003324.1 + 25216 0.71 0.37525
Target:  5'- gCUCGAUCGcguCACCGgcggcaUCGCCAAGaACCu -3'
miRNA:   3'- -GAGCUAGCu--GUGGC------GGCGGUUCcUGG- -5'
12417 3' -56.6 NC_003324.1 + 43356 0.7 0.435669
Target:  5'- gUCGG-CGAaauccuugagaaacUGCCGCUGCCAGGcGACCc -3'
miRNA:   3'- gAGCUaGCU--------------GUGGCGGCGGUUC-CUGG- -5'
12417 3' -56.6 NC_003324.1 + 8280 0.69 0.487231
Target:  5'- gUCGAagugccaGGCGCgCGCCGCCGggcagugagcaGGGACUg -3'
miRNA:   3'- gAGCUag-----CUGUG-GCGGCGGU-----------UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 5164 0.69 0.507432
Target:  5'- gUCGAUCG-CGCCGCUuaaGCUAucAGG-CCg -3'
miRNA:   3'- gAGCUAGCuGUGGCGG---CGGU--UCCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.