miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12417 3' -56.6 NC_003324.1 + 5540 0.66 0.698239
Target:  5'- -gCGggCGACGCCGCCuGCCu---ACCc -3'
miRNA:   3'- gaGCuaGCUGUGGCGG-CGGuuccUGG- -5'
12417 3' -56.6 NC_003324.1 + 23626 0.66 0.698239
Target:  5'- -cCGAgCG-CGcCCGCCGCCAcgcuguGGGGCa -3'
miRNA:   3'- gaGCUaGCuGU-GGCGGCGGU------UCCUGg -5'
12417 3' -56.6 NC_003324.1 + 49595 0.66 0.702459
Target:  5'- gCUCGAUaCGGCcgagagugccagaauGCCGCCcucGUUgcGGACCg -3'
miRNA:   3'- -GAGCUA-GCUG---------------UGGCGG---CGGuuCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 22181 0.66 0.70877
Target:  5'- gCUCGAUCGuC-UgGCgCGCCGAGaACCu -3'
miRNA:   3'- -GAGCUAGCuGuGgCG-GCGGUUCcUGG- -5'
12417 3' -56.6 NC_003324.1 + 17749 0.67 0.633053
Target:  5'- -cCGAUUG-UGCCGgugacacCCGCCAucAGGGCCa -3'
miRNA:   3'- gaGCUAGCuGUGGC-------GGCGGU--UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 57137 0.67 0.633053
Target:  5'- gCUCGAaacccugcUGACGCCcCCgacugagugcgaaGCCAAGGGCCu -3'
miRNA:   3'- -GAGCUa-------GCUGUGGcGG-------------CGGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 51722 0.67 0.623381
Target:  5'- -gCGAggcCGACGCaaUCGCCGAGGGCg -3'
miRNA:   3'- gaGCUa--GCUGUGgcGGCGGUUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 37639 0.67 0.612641
Target:  5'- --gGAUCGACAggagGUCGCCGAGGugguCCg -3'
miRNA:   3'- gagCUAGCUGUgg--CGGCGGUUCCu---GG- -5'
12417 3' -56.6 NC_003324.1 + 38477 0.67 0.644873
Target:  5'- -gUGAUCGACgagGCCGaCCGCCu-GGugaaACCa -3'
miRNA:   3'- gaGCUAGCUG---UGGC-GGCGGuuCC----UGG- -5'
12417 3' -56.6 NC_003324.1 + 6823 0.67 0.630904
Target:  5'- uCUgGAUCGGCGCCGuuGgCCAccuuuaccgaugucGGGAg- -3'
miRNA:   3'- -GAgCUAGCUGUGGCggC-GGU--------------UCCUgg -5'
12417 3' -56.6 NC_003324.1 + 15101 0.67 0.644873
Target:  5'- -aUGAUCGACcuGCCGUCGCCuuu-GCCc -3'
miRNA:   3'- gaGCUAGCUG--UGGCGGCGGuuccUGG- -5'
12417 3' -56.6 NC_003324.1 + 29151 0.67 0.644873
Target:  5'- -aCGAguUCGGCGuguCCGUCGAGGACCu -3'
miRNA:   3'- gaGCU--AGCUGUggcGGCGGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 15284 0.67 0.634128
Target:  5'- uUCGAgguuUCGuCcCCGCCGUCAcGGGCg -3'
miRNA:   3'- gAGCU----AGCuGuGGCGGCGGUuCCUGg -5'
12417 3' -56.6 NC_003324.1 + 36725 0.67 0.623381
Target:  5'- -cCGG-CGGCACCuUCGCCGGGGAa- -3'
miRNA:   3'- gaGCUaGCUGUGGcGGCGGUUCCUgg -5'
12417 3' -56.6 NC_003324.1 + 21388 0.67 0.623381
Target:  5'- aUCGAg-GAUAUCGCCGgCGAGGcggcgaacgcgGCCg -3'
miRNA:   3'- gAGCUagCUGUGGCGGCgGUUCC-----------UGG- -5'
12417 3' -56.6 NC_003324.1 + 38323 0.67 0.634128
Target:  5'- -gCGAUCGGCAuuCCGgCGCUgaaaGAGGAUUu -3'
miRNA:   3'- gaGCUAGCUGU--GGCgGCGG----UUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 18316 0.68 0.569927
Target:  5'- cCUUGGU-GAgACCGCCaaagcgggcGCCGAGGAUUg -3'
miRNA:   3'- -GAGCUAgCUgUGGCGG---------CGGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 17619 0.68 0.548828
Target:  5'- gUUGAgcaCGAUGCCGCCGagcucgggcCCGAGGAUa -3'
miRNA:   3'- gAGCUa--GCUGUGGCGGC---------GGUUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 33820 0.68 0.566748
Target:  5'- aUCGAUUGcggcuuGCACgGCCGCCucgcggcaaucguaGAGGuCCa -3'
miRNA:   3'- gAGCUAGC------UGUGgCGGCGG--------------UUCCuGG- -5'
12417 3' -56.6 NC_003324.1 + 47575 0.68 0.569927
Target:  5'- -cCGAUCGACcCuCGCCGUCGA--GCCg -3'
miRNA:   3'- gaGCUAGCUGuG-GCGGCGGUUccUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.