miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12417 3' -56.6 NC_003324.1 + 13066 0.71 0.383031
Target:  5'- -aCGAUuugcagcCGGUACCGCCGCCGccGACCg -3'
miRNA:   3'- gaGCUA-------GCUGUGGCGGCGGUucCUGG- -5'
12417 3' -56.6 NC_003324.1 + 19265 0.71 0.401599
Target:  5'- --aGAUCGccCAgCGCCGCgcaGAGGACCg -3'
miRNA:   3'- gagCUAGCu-GUgGCGGCGg--UUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 36315 0.71 0.41064
Target:  5'- --aGAUCGACACCGaUCGCgAauuAGGACa -3'
miRNA:   3'- gagCUAGCUGUGGC-GGCGgU---UCCUGg -5'
12417 3' -56.6 NC_003324.1 + 5531 0.71 0.423507
Target:  5'- gCUCGAUCGGCaucaaguucccgguuGCCGCCgcaaccuucGCCGcGGGCg -3'
miRNA:   3'- -GAGCUAGCUG---------------UGGCGG---------CGGUuCCUGg -5'
12417 3' -56.6 NC_003324.1 + 49973 0.7 0.429095
Target:  5'- -gCGAUCGGCGCUGCC-CUgauGGGGGCa -3'
miRNA:   3'- gaGCUAGCUGUGGCGGcGG---UUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 43356 0.7 0.435669
Target:  5'- gUCGG-CGAaauccuugagaaacUGCCGCUGCCAGGcGACCc -3'
miRNA:   3'- gAGCUaGCU--------------GUGGCGGCGGUUC-CUGG- -5'
12417 3' -56.6 NC_003324.1 + 29638 0.7 0.438504
Target:  5'- uCUgGcgCaACGCCGCCGCCugagccGGGAUCg -3'
miRNA:   3'- -GAgCuaGcUGUGGCGGCGGu-----UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 21960 0.7 0.447073
Target:  5'- aUCGAccugUCGACcCCgaagaaggccaagGCCGCCGAGGAggcCCg -3'
miRNA:   3'- gAGCU----AGCUGuGG-------------CGGCGGUUCCU---GG- -5'
12417 3' -56.6 NC_003324.1 + 34500 0.7 0.44803
Target:  5'- gUCGGcCGACaucACCGauGCCGAGGACg -3'
miRNA:   3'- gAGCUaGCUG---UGGCggCGGUUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 26682 0.7 0.45767
Target:  5'- --gGAUCGAUGCCGCUGUUGAGcGugCu -3'
miRNA:   3'- gagCUAGCUGUGGCGGCGGUUC-CugG- -5'
12417 3' -56.6 NC_003324.1 + 42124 0.7 0.467419
Target:  5'- aCUCG-UCGccaAUGCCGCCGC-GGGGAUCa -3'
miRNA:   3'- -GAGCuAGC---UGUGGCGGCGgUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 28118 0.7 0.467419
Target:  5'- uCUCGAUCGAgaUAUCcaacCCGCCAAGGcggaugcgGCCg -3'
miRNA:   3'- -GAGCUAGCU--GUGGc---GGCGGUUCC--------UGG- -5'
12417 3' -56.6 NC_003324.1 + 20594 0.69 0.477275
Target:  5'- -cCGGUgcugUGGCGCCGUCGCCAGuGACUu -3'
miRNA:   3'- gaGCUA----GCUGUGGCGGCGGUUcCUGG- -5'
12417 3' -56.6 NC_003324.1 + 29458 0.69 0.487231
Target:  5'- cCUCGAcgaUGACACgGCCGCCuggcugcGGGCg -3'
miRNA:   3'- -GAGCUa--GCUGUGgCGGCGGuu-----CCUGg -5'
12417 3' -56.6 NC_003324.1 + 8280 0.69 0.487231
Target:  5'- gUCGAagugccaGGCGCgCGCCGCCGggcagugagcaGGGACUg -3'
miRNA:   3'- gAGCUag-----CUGUG-GCGGCGGU-----------UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 2800 0.69 0.487231
Target:  5'- -gCGAUCGGCuaucgcuuggagACUGCCGCCGccGACa -3'
miRNA:   3'- gaGCUAGCUG------------UGGCGGCGGUucCUGg -5'
12417 3' -56.6 NC_003324.1 + 22320 0.69 0.497286
Target:  5'- -gCGAUCGGCAagacgUUGCCGCUcccgAAGGugCg -3'
miRNA:   3'- gaGCUAGCUGU-----GGCGGCGG----UUCCugG- -5'
12417 3' -56.6 NC_003324.1 + 52980 0.69 0.497286
Target:  5'- -aCGAgcgCGAC-CUGCCGCCAAugaagcGGAUCc -3'
miRNA:   3'- gaGCUa--GCUGuGGCGGCGGUU------CCUGG- -5'
12417 3' -56.6 NC_003324.1 + 49577 0.69 0.497286
Target:  5'- --aGAaCGGCACCGUCGUUGAGGcugACCa -3'
miRNA:   3'- gagCUaGCUGUGGCGGCGGUUCC---UGG- -5'
12417 3' -56.6 NC_003324.1 + 49431 0.69 0.507432
Target:  5'- aUCG-UCGACACCGCUGUu--GGcGCCg -3'
miRNA:   3'- gAGCuAGCUGUGGCGGCGguuCC-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.