Results 21 - 40 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 52820 | 0.66 | 0.666321 |
Target: 5'- -cUGGUCGACAa--CCGCCAaacAGGACa -3' miRNA: 3'- gaGCUAGCUGUggcGGCGGU---UCCUGg -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 7323 | 0.66 | 0.666321 |
Target: 5'- -cCG-UCGuu-CCGCgCGCCGAGGGCa -3' miRNA: 3'- gaGCuAGCuguGGCG-GCGGUUCCUGg -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 13416 | 0.66 | 0.655608 |
Target: 5'- uUUGGUcCGGCgcgGCUGCCGUCGAGcACCu -3' miRNA: 3'- gAGCUA-GCUG---UGGCGGCGGUUCcUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 26060 | 0.66 | 0.655608 |
Target: 5'- aUCGAUCuggucuggGGCGCCGaaggcaccaaCGCCAgcaauggucAGGGCCu -3' miRNA: 3'- gAGCUAG--------CUGUGGCg---------GCGGU---------UCCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 38477 | 0.67 | 0.644873 |
Target: 5'- -gUGAUCGACgagGCCGaCCGCCu-GGugaaACCa -3' miRNA: 3'- gaGCUAGCUG---UGGC-GGCGGuuCC----UGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 15101 | 0.67 | 0.644873 |
Target: 5'- -aUGAUCGACcuGCCGUCGCCuuu-GCCc -3' miRNA: 3'- gaGCUAGCUG--UGGCGGCGGuuccUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 29151 | 0.67 | 0.644873 |
Target: 5'- -aCGAguUCGGCGuguCCGUCGAGGACCu -3' miRNA: 3'- gaGCU--AGCUGUggcGGCGGUUCCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 15284 | 0.67 | 0.634128 |
Target: 5'- uUCGAgguuUCGuCcCCGCCGUCAcGGGCg -3' miRNA: 3'- gAGCU----AGCuGuGGCGGCGGUuCCUGg -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 38323 | 0.67 | 0.634128 |
Target: 5'- -gCGAUCGGCAuuCCGgCGCUgaaaGAGGAUUu -3' miRNA: 3'- gaGCUAGCUGU--GGCgGCGG----UUCCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 17749 | 0.67 | 0.633053 |
Target: 5'- -cCGAUUG-UGCCGgugacacCCGCCAucAGGGCCa -3' miRNA: 3'- gaGCUAGCuGUGGC-------GGCGGU--UCCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 57137 | 0.67 | 0.633053 |
Target: 5'- gCUCGAaacccugcUGACGCCcCCgacugagugcgaaGCCAAGGGCCu -3' miRNA: 3'- -GAGCUa-------GCUGUGGcGG-------------CGGUUCCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 6823 | 0.67 | 0.630904 |
Target: 5'- uCUgGAUCGGCGCCGuuGgCCAccuuuaccgaugucGGGAg- -3' miRNA: 3'- -GAgCUAGCUGUGGCggC-GGU--------------UCCUgg -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 21388 | 0.67 | 0.623381 |
Target: 5'- aUCGAg-GAUAUCGCCGgCGAGGcggcgaacgcgGCCg -3' miRNA: 3'- gAGCUagCUGUGGCGGCgGUUCC-----------UGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 51722 | 0.67 | 0.623381 |
Target: 5'- -gCGAggcCGACGCaaUCGCCGAGGGCg -3' miRNA: 3'- gaGCUa--GCUGUGgcGGCGGUUCCUGg -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 36725 | 0.67 | 0.623381 |
Target: 5'- -cCGG-CGGCACCuUCGCCGGGGAa- -3' miRNA: 3'- gaGCUaGCUGUGGcGGCGGUUCCUgg -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 37639 | 0.67 | 0.612641 |
Target: 5'- --gGAUCGACAggagGUCGCCGAGGugguCCg -3' miRNA: 3'- gagCUAGCUGUgg--CGGCGGUUCCu---GG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 15432 | 0.68 | 0.591218 |
Target: 5'- aCUCGAgggagcaguUUGACGCgaagGuuGCCAGGGGCg -3' miRNA: 3'- -GAGCU---------AGCUGUGg---CggCGGUUCCUGg -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 32123 | 0.68 | 0.591218 |
Target: 5'- gCUCGGcCGugAgCCGCCGCCGGcaGACa -3' miRNA: 3'- -GAGCUaGCugU-GGCGGCGGUUc-CUGg -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 23864 | 0.68 | 0.591218 |
Target: 5'- gCUCGc-CGAgGCCgaacgcGCCGCCGAaucGGACCc -3' miRNA: 3'- -GAGCuaGCUgUGG------CGGCGGUU---CCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 39263 | 0.68 | 0.580552 |
Target: 5'- aUCGGUUGcCGCCGUggcugCGCCAgaAGGugCc -3' miRNA: 3'- gAGCUAGCuGUGGCG-----GCGGU--UCCugG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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