miRNA display CGI


Results 21 - 40 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12417 3' -56.6 NC_003324.1 + 15742 0.68 0.569927
Target:  5'- cCUUGAUCGcguCAUCGagcgCGCCG-GGGCCg -3'
miRNA:   3'- -GAGCUAGCu--GUGGCg---GCGGUuCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 16340 0.69 0.507432
Target:  5'- -gCGA-CGGCGuuGCCGUCGaucgcgucguccAGGACCu -3'
miRNA:   3'- gaGCUaGCUGUggCGGCGGU------------UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 16419 0.78 0.147504
Target:  5'- -gCGAUCGACGgcaaCGCCGUCGcGGACCg -3'
miRNA:   3'- gaGCUAGCUGUg---GCGGCGGUuCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 17619 0.68 0.548828
Target:  5'- gUUGAgcaCGAUGCCGCCGagcucgggcCCGAGGAUa -3'
miRNA:   3'- gAGCUa--GCUGUGGCGGC---------GGUUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 17696 0.68 0.580552
Target:  5'- gCUCGG-CGGCAUCGUgcucaacggcgCGCCGGGGcACUa -3'
miRNA:   3'- -GAGCUaGCUGUGGCG-----------GCGGUUCC-UGG- -5'
12417 3' -56.6 NC_003324.1 + 17749 0.67 0.633053
Target:  5'- -cCGAUUG-UGCCGgugacacCCGCCAucAGGGCCa -3'
miRNA:   3'- gaGCUAGCuGUGGC-------GGCGGU--UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 18002 0.71 0.378695
Target:  5'- gUCGAUCG-CuucggauaccgauugGCCGgCGCCAcGGGCCa -3'
miRNA:   3'- gAGCUAGCuG---------------UGGCgGCGGUuCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 18316 0.68 0.569927
Target:  5'- cCUUGGU-GAgACCGCCaaagcgggcGCCGAGGAUUg -3'
miRNA:   3'- -GAGCUAgCUgUGGCGG---------CGGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 19265 0.71 0.401599
Target:  5'- --aGAUCGccCAgCGCCGCgcaGAGGACCg -3'
miRNA:   3'- gagCUAGCu-GUgGCGGCGg--UUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 19380 0.66 0.687647
Target:  5'- aUgGAUCGACGCCGgCGCgCGucGcGCCg -3'
miRNA:   3'- gAgCUAGCUGUGGCgGCG-GUucC-UGG- -5'
12417 3' -56.6 NC_003324.1 + 19393 0.66 0.70877
Target:  5'- gCUCcg-CGAgCGCUacauggcuauGCCGcCCAAGGGCCg -3'
miRNA:   3'- -GAGcuaGCU-GUGG----------CGGC-GGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 20594 0.69 0.477275
Target:  5'- -cCGGUgcugUGGCGCCGUCGCCAGuGACUu -3'
miRNA:   3'- gaGCUA----GCUGUGGCGGCGGUUcCUGG- -5'
12417 3' -56.6 NC_003324.1 + 21388 0.67 0.623381
Target:  5'- aUCGAg-GAUAUCGCCGgCGAGGcggcgaacgcgGCCg -3'
miRNA:   3'- gAGCUagCUGUGGCGGCgGUUCC-----------UGG- -5'
12417 3' -56.6 NC_003324.1 + 21960 0.7 0.447073
Target:  5'- aUCGAccugUCGACcCCgaagaaggccaagGCCGCCGAGGAggcCCg -3'
miRNA:   3'- gAGCU----AGCUGuGG-------------CGGCGGUUCCU---GG- -5'
12417 3' -56.6 NC_003324.1 + 22181 0.66 0.70877
Target:  5'- gCUCGAUCGuC-UgGCgCGCCGAGaACCu -3'
miRNA:   3'- -GAGCUAGCuGuGgCG-GCGGUUCcUGG- -5'
12417 3' -56.6 NC_003324.1 + 22210 0.66 0.687647
Target:  5'- gUUGGUgGGCuuGCCGCCGCgCAccuucGGGAgCg -3'
miRNA:   3'- gAGCUAgCUG--UGGCGGCG-GU-----UCCUgG- -5'
12417 3' -56.6 NC_003324.1 + 22320 0.69 0.497286
Target:  5'- -gCGAUCGGCAagacgUUGCCGCUcccgAAGGugCg -3'
miRNA:   3'- gaGCUAGCUGU-----GGCGGCGG----UUCCugG- -5'
12417 3' -56.6 NC_003324.1 + 23626 0.66 0.698239
Target:  5'- -cCGAgCG-CGcCCGCCGCCAcgcuguGGGGCa -3'
miRNA:   3'- gaGCUaGCuGU-GGCGGCGGU------UCCUGg -5'
12417 3' -56.6 NC_003324.1 + 23864 0.68 0.591218
Target:  5'- gCUCGc-CGAgGCCgaacgcGCCGCCGAaucGGACCc -3'
miRNA:   3'- -GAGCuaGCUgUGG------CGGCGGUU---CCUGG- -5'
12417 3' -56.6 NC_003324.1 + 24570 0.72 0.36673
Target:  5'- --aGAUCGuCACCGCUGCgGGcGACCa -3'
miRNA:   3'- gagCUAGCuGUGGCGGCGgUUcCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.