miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12417 3' -56.6 NC_003324.1 + 1158 0.68 0.580552
Target:  5'- gUCGAagCGGUACCgcaGCCGCCA-GGACUu -3'
miRNA:   3'- gAGCUa-GCUGUGG---CGGCGGUuCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 2400 0.66 0.70877
Target:  5'- -aCGAUgaUGACACCGCCaacGCCGAuGAUg -3'
miRNA:   3'- gaGCUA--GCUGUGGCGG---CGGUUcCUGg -5'
12417 3' -56.6 NC_003324.1 + 2800 0.69 0.487231
Target:  5'- -gCGAUCGGCuaucgcuuggagACUGCCGCCGccGACa -3'
miRNA:   3'- gaGCUAGCUG------------UGGCGGCGGUucCUGg -5'
12417 3' -56.6 NC_003324.1 + 4527 0.74 0.282003
Target:  5'- cCUCGAUCGACGCCaCCGaCAAGaugaGCCg -3'
miRNA:   3'- -GAGCUAGCUGUGGcGGCgGUUCc---UGG- -5'
12417 3' -56.6 NC_003324.1 + 4593 0.73 0.294014
Target:  5'- gUCGAUCGAgGCCuuaguagucgcgucGCCGCCGuagAGGAUg -3'
miRNA:   3'- gAGCUAGCUgUGG--------------CGGCGGU---UCCUGg -5'
12417 3' -56.6 NC_003324.1 + 5045 1.1 0.000738
Target:  5'- uCUCGAUCGACACCGCCGCCAAGGACCc -3'
miRNA:   3'- -GAGCUAGCUGUGGCGGCGGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 5164 0.69 0.507432
Target:  5'- gUCGAUCG-CGCCGCUuaaGCUAucAGG-CCg -3'
miRNA:   3'- gAGCUAGCuGUGGCGG---CGGU--UCCuGG- -5'
12417 3' -56.6 NC_003324.1 + 5531 0.71 0.423507
Target:  5'- gCUCGAUCGGCaucaaguucccgguuGCCGCCgcaaccuucGCCGcGGGCg -3'
miRNA:   3'- -GAGCUAGCUG---------------UGGCGG---------CGGUuCCUGg -5'
12417 3' -56.6 NC_003324.1 + 5540 0.66 0.698239
Target:  5'- -gCGggCGACGCCGCCuGCCu---ACCc -3'
miRNA:   3'- gaGCuaGCUGUGGCGG-CGGuuccUGG- -5'
12417 3' -56.6 NC_003324.1 + 6823 0.67 0.630904
Target:  5'- uCUgGAUCGGCGCCGuuGgCCAccuuuaccgaugucGGGAg- -3'
miRNA:   3'- -GAgCUAGCUGUGGCggC-GGU--------------UCCUgg -5'
12417 3' -56.6 NC_003324.1 + 7323 0.66 0.666321
Target:  5'- -cCG-UCGuu-CCGCgCGCCGAGGGCa -3'
miRNA:   3'- gaGCuAGCuguGGCG-GCGGUUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 8280 0.69 0.487231
Target:  5'- gUCGAagugccaGGCGCgCGCCGCCGggcagugagcaGGGACUg -3'
miRNA:   3'- gAGCUag-----CUGUG-GCGGCGGU-----------UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 8569 0.73 0.289021
Target:  5'- aUCGAuuUCGcGCGCUGgcucaCUGCCGAGGACCg -3'
miRNA:   3'- gAGCU--AGC-UGUGGC-----GGCGGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 8647 0.8 0.102555
Target:  5'- aUCGAUCgcaccgacuucuccGACACCGCCGCCAAgaucuGGAUCu -3'
miRNA:   3'- gAGCUAG--------------CUGUGGCGGCGGUU-----CCUGG- -5'
12417 3' -56.6 NC_003324.1 + 13066 0.71 0.383031
Target:  5'- -aCGAUuugcagcCGGUACCGCCGCCGccGACCg -3'
miRNA:   3'- gaGCUA-------GCUGUGGCGGCGGUucCUGG- -5'
12417 3' -56.6 NC_003324.1 + 13333 0.69 0.507432
Target:  5'- gCUCGA-CGGCAgCCG-CGCC--GGACCa -3'
miRNA:   3'- -GAGCUaGCUGU-GGCgGCGGuuCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 13416 0.66 0.655608
Target:  5'- uUUGGUcCGGCgcgGCUGCCGUCGAGcACCu -3'
miRNA:   3'- gAGCUA-GCUG---UGGCGGCGGUUCcUGG- -5'
12417 3' -56.6 NC_003324.1 + 15101 0.67 0.644873
Target:  5'- -aUGAUCGACcuGCCGUCGCCuuu-GCCc -3'
miRNA:   3'- gaGCUAGCUG--UGGCGGCGGuuccUGG- -5'
12417 3' -56.6 NC_003324.1 + 15284 0.67 0.634128
Target:  5'- uUCGAgguuUCGuCcCCGCCGUCAcGGGCg -3'
miRNA:   3'- gAGCU----AGCuGuGGCGGCGGUuCCUGg -5'
12417 3' -56.6 NC_003324.1 + 15432 0.68 0.591218
Target:  5'- aCUCGAgggagcaguUUGACGCgaagGuuGCCAGGGGCg -3'
miRNA:   3'- -GAGCU---------AGCUGUGg---CggCGGUUCCUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.