Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 28118 | 0.7 | 0.467419 |
Target: 5'- uCUCGAUCGAgaUAUCcaacCCGCCAAGGcggaugcgGCCg -3' miRNA: 3'- -GAGCUAGCU--GUGGc---GGCGGUUCC--------UGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 35118 | 0.71 | 0.37525 |
Target: 5'- gUCG-UCGccaGCGCCGUCGCCGuuGACCu -3' miRNA: 3'- gAGCuAGC---UGUGGCGGCGGUucCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 18002 | 0.71 | 0.378695 |
Target: 5'- gUCGAUCG-CuucggauaccgauugGCCGgCGCCAcGGGCCa -3' miRNA: 3'- gAGCUAGCuG---------------UGGCgGCGGUuCCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 13066 | 0.71 | 0.383031 |
Target: 5'- -aCGAUuugcagcCGGUACCGCCGCCGccGACCg -3' miRNA: 3'- gaGCUA-------GCUGUGGCGGCGGUucCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 5531 | 0.71 | 0.423507 |
Target: 5'- gCUCGAUCGGCaucaaguucccgguuGCCGCCgcaaccuucGCCGcGGGCg -3' miRNA: 3'- -GAGCUAGCUG---------------UGGCGG---------CGGUuCCUGg -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 49973 | 0.7 | 0.429095 |
Target: 5'- -gCGAUCGGCGCUGCC-CUgauGGGGGCa -3' miRNA: 3'- gaGCUAGCUGUGGCGGcGG---UUCCUGg -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 29638 | 0.7 | 0.438504 |
Target: 5'- uCUgGcgCaACGCCGCCGCCugagccGGGAUCg -3' miRNA: 3'- -GAgCuaGcUGUGGCGGCGGu-----UCCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 26682 | 0.7 | 0.45767 |
Target: 5'- --gGAUCGAUGCCGCUGUUGAGcGugCu -3' miRNA: 3'- gagCUAGCUGUGGCGGCGGUUC-CugG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 42124 | 0.7 | 0.467419 |
Target: 5'- aCUCG-UCGccaAUGCCGCCGC-GGGGAUCa -3' miRNA: 3'- -GAGCuAGC---UGUGGCGGCGgUUCCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 24570 | 0.72 | 0.36673 |
Target: 5'- --aGAUCGuCACCGCUGCgGGcGACCa -3' miRNA: 3'- gagCUAGCuGUGGCGGCGgUUcCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 54241 | 0.72 | 0.34198 |
Target: 5'- -gCGAaggcgCGGCACCgGuuGCCAuGGACCg -3' miRNA: 3'- gaGCUa----GCUGUGG-CggCGGUuCCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 30476 | 0.72 | 0.326162 |
Target: 5'- gUCGaAUCGGCGCCGCCGagcAGGcCCu -3' miRNA: 3'- gAGC-UAGCUGUGGCGGCgguUCCuGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 8647 | 0.8 | 0.102555 |
Target: 5'- aUCGAUCgcaccgacuucuccGACACCGCCGCCAAgaucuGGAUCu -3' miRNA: 3'- gAGCUAG--------------CUGUGGCGGCGGUU-----CCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 33671 | 0.8 | 0.10341 |
Target: 5'- gCUCGAUaCGccuGCGCUGCCGCCAAGGcAUCa -3' miRNA: 3'- -GAGCUA-GC---UGUGGCGGCGGUUCC-UGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 31463 | 0.77 | 0.173177 |
Target: 5'- uCUCGGUCGAauaGCUGCCGUCGcuguuGGGACg -3' miRNA: 3'- -GAGCUAGCUg--UGGCGGCGGU-----UCCUGg -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 49651 | 0.75 | 0.236633 |
Target: 5'- uUCGA-CGACGCUGCCGauauCAAGGGCg -3' miRNA: 3'- gAGCUaGCUGUGGCGGCg---GUUCCUGg -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 45905 | 0.75 | 0.242719 |
Target: 5'- cCUCauUCGGCGCCGCCGCUucGGAa- -3' miRNA: 3'- -GAGcuAGCUGUGGCGGCGGuuCCUgg -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 33499 | 0.74 | 0.259805 |
Target: 5'- -gCGGuccUCGAUcCCGCCGCCAaacguaaugugcgaGGGGCCg -3' miRNA: 3'- gaGCU---AGCUGuGGCGGCGGU--------------UCCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 4527 | 0.74 | 0.282003 |
Target: 5'- cCUCGAUCGACGCCaCCGaCAAGaugaGCCg -3' miRNA: 3'- -GAGCUAGCUGUGGcGGCgGUUCc---UGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 8569 | 0.73 | 0.289021 |
Target: 5'- aUCGAuuUCGcGCGCUGgcucaCUGCCGAGGACCg -3' miRNA: 3'- gAGCU--AGC-UGUGGC-----GGCGGUUCCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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