miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12417 3' -56.6 NC_003324.1 + 5045 1.1 0.000738
Target:  5'- uCUCGAUCGACACCGCCGCCAAGGACCc -3'
miRNA:   3'- -GAGCUAGCUGUGGCGGCGGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 8647 0.8 0.102555
Target:  5'- aUCGAUCgcaccgacuucuccGACACCGCCGCCAAgaucuGGAUCu -3'
miRNA:   3'- gAGCUAG--------------CUGUGGCGGCGGUU-----CCUGG- -5'
12417 3' -56.6 NC_003324.1 + 33671 0.8 0.10341
Target:  5'- gCUCGAUaCGccuGCGCUGCCGCCAAGGcAUCa -3'
miRNA:   3'- -GAGCUA-GC---UGUGGCGGCGGUUCC-UGG- -5'
12417 3' -56.6 NC_003324.1 + 32571 0.79 0.128812
Target:  5'- aUCG-UCGACACCGUgauCGCCGAGGcuGCCg -3'
miRNA:   3'- gAGCuAGCUGUGGCG---GCGGUUCC--UGG- -5'
12417 3' -56.6 NC_003324.1 + 16419 0.78 0.147504
Target:  5'- -gCGAUCGACGgcaaCGCCGUCGcGGACCg -3'
miRNA:   3'- gaGCUAGCUGUg---GCGGCGGUuCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 31463 0.77 0.173177
Target:  5'- uCUCGGUCGAauaGCUGCCGUCGcuguuGGGACg -3'
miRNA:   3'- -GAGCUAGCUg--UGGCGGCGGU-----UCCUGg -5'
12417 3' -56.6 NC_003324.1 + 49651 0.75 0.236633
Target:  5'- uUCGA-CGACGCUGCCGauauCAAGGGCg -3'
miRNA:   3'- gAGCUaGCUGUGGCGGCg---GUUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 45905 0.75 0.242719
Target:  5'- cCUCauUCGGCGCCGCCGCUucGGAa- -3'
miRNA:   3'- -GAGcuAGCUGUGGCGGCGGuuCCUgg -5'
12417 3' -56.6 NC_003324.1 + 33499 0.74 0.259805
Target:  5'- -gCGGuccUCGAUcCCGCCGCCAaacguaaugugcgaGGGGCCg -3'
miRNA:   3'- gaGCU---AGCUGuGGCGGCGGU--------------UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 43241 0.74 0.273083
Target:  5'- gCUCgGAUUGGCGCucgcucaacaagcuCGCCGUCGAGGACg -3'
miRNA:   3'- -GAG-CUAGCUGUG--------------GCGGCGGUUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 4527 0.74 0.282003
Target:  5'- cCUCGAUCGACGCCaCCGaCAAGaugaGCCg -3'
miRNA:   3'- -GAGCUAGCUGUGGcGGCgGUUCc---UGG- -5'
12417 3' -56.6 NC_003324.1 + 8569 0.73 0.289021
Target:  5'- aUCGAuuUCGcGCGCUGgcucaCUGCCGAGGACCg -3'
miRNA:   3'- gAGCU--AGC-UGUGGC-----GGCGGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 4593 0.73 0.294014
Target:  5'- gUCGAUCGAgGCCuuaguagucgcgucGCCGCCGuagAGGAUg -3'
miRNA:   3'- gAGCUAGCUgUGG--------------CGGCGGU---UCCUGg -5'
12417 3' -56.6 NC_003324.1 + 30476 0.72 0.326162
Target:  5'- gUCGaAUCGGCGCCGCCGagcAGGcCCu -3'
miRNA:   3'- gAGC-UAGCUGUGGCGGCgguUCCuGG- -5'
12417 3' -56.6 NC_003324.1 + 30054 0.72 0.341176
Target:  5'- aUCGAUgcggaccCGGCuGCCGCCGCUAcgcAGGACg -3'
miRNA:   3'- gAGCUA-------GCUG-UGGCGGCGGU---UCCUGg -5'
12417 3' -56.6 NC_003324.1 + 54241 0.72 0.34198
Target:  5'- -gCGAaggcgCGGCACCgGuuGCCAuGGACCg -3'
miRNA:   3'- gaGCUa----GCUGUGG-CggCGGUuCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 24570 0.72 0.36673
Target:  5'- --aGAUCGuCACCGCUGCgGGcGACCa -3'
miRNA:   3'- gagCUAGCuGUGGCGGCGgUUcCUGG- -5'
12417 3' -56.6 NC_003324.1 + 25216 0.71 0.37525
Target:  5'- gCUCGAUCGcguCACCGgcggcaUCGCCAAGaACCu -3'
miRNA:   3'- -GAGCUAGCu--GUGGC------GGCGGUUCcUGG- -5'
12417 3' -56.6 NC_003324.1 + 35118 0.71 0.37525
Target:  5'- gUCG-UCGccaGCGCCGUCGCCGuuGACCu -3'
miRNA:   3'- gAGCuAGC---UGUGGCGGCGGUucCUGG- -5'
12417 3' -56.6 NC_003324.1 + 18002 0.71 0.378695
Target:  5'- gUCGAUCG-CuucggauaccgauugGCCGgCGCCAcGGGCCa -3'
miRNA:   3'- gAGCUAGCuG---------------UGGCgGCGGUuCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.