miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12417 3' -56.6 NC_003324.1 + 39263 0.68 0.580552
Target:  5'- aUCGGUUGcCGCCGUggcugCGCCAgaAGGugCc -3'
miRNA:   3'- gAGCUAGCuGUGGCG-----GCGGU--UCCugG- -5'
12417 3' -56.6 NC_003324.1 + 32123 0.68 0.591218
Target:  5'- gCUCGGcCGugAgCCGCCGCCGGcaGACa -3'
miRNA:   3'- -GAGCUaGCugU-GGCGGCGGUUc-CUGg -5'
12417 3' -56.6 NC_003324.1 + 23864 0.68 0.591218
Target:  5'- gCUCGc-CGAgGCCgaacgcGCCGCCGAaucGGACCc -3'
miRNA:   3'- -GAGCuaGCUgUGG------CGGCGGUU---CCUGG- -5'
12417 3' -56.6 NC_003324.1 + 17619 0.68 0.548828
Target:  5'- gUUGAgcaCGAUGCCGCCGagcucgggcCCGAGGAUa -3'
miRNA:   3'- gAGCUa--GCUGUGGCGGC---------GGUUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 33820 0.68 0.566748
Target:  5'- aUCGAUUGcggcuuGCACgGCCGCCucgcggcaaucguaGAGGuCCa -3'
miRNA:   3'- gAGCUAGC------UGUGgCGGCGG--------------UUCCuGG- -5'
12417 3' -56.6 NC_003324.1 + 18316 0.68 0.569927
Target:  5'- cCUUGGU-GAgACCGCCaaagcgggcGCCGAGGAUUg -3'
miRNA:   3'- -GAGCUAgCUgUGGCGG---------CGGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 47575 0.68 0.569927
Target:  5'- -cCGAUCGACcCuCGCCGUCGA--GCCg -3'
miRNA:   3'- gaGCUAGCUGuG-GCGGCGGUUccUGG- -5'
12417 3' -56.6 NC_003324.1 + 8280 0.69 0.487231
Target:  5'- gUCGAagugccaGGCGCgCGCCGCCGggcagugagcaGGGACUg -3'
miRNA:   3'- gAGCUag-----CUGUG-GCGGCGGU-----------UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 5164 0.69 0.507432
Target:  5'- gUCGAUCG-CGCCGCUuaaGCUAucAGG-CCg -3'
miRNA:   3'- gAGCUAGCuGUGGCGG---CGGU--UCCuGG- -5'
12417 3' -56.6 NC_003324.1 + 49431 0.69 0.507432
Target:  5'- aUCG-UCGACACCGCUGUu--GGcGCCg -3'
miRNA:   3'- gAGCuAGCUGUGGCGGCGguuCC-UGG- -5'
12417 3' -56.6 NC_003324.1 + 22320 0.69 0.497286
Target:  5'- -gCGAUCGGCAagacgUUGCCGCUcccgAAGGugCg -3'
miRNA:   3'- gaGCUAGCUGU-----GGCGGCGG----UUCCugG- -5'
12417 3' -56.6 NC_003324.1 + 16340 0.69 0.507432
Target:  5'- -gCGA-CGGCGuuGCCGUCGaucgcgucguccAGGACCu -3'
miRNA:   3'- gaGCUaGCUGUggCGGCGGU------------UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 2800 0.69 0.487231
Target:  5'- -gCGAUCGGCuaucgcuuggagACUGCCGCCGccGACa -3'
miRNA:   3'- gaGCUAGCUG------------UGGCGGCGGUucCUGg -5'
12417 3' -56.6 NC_003324.1 + 13333 0.69 0.507432
Target:  5'- gCUCGA-CGGCAgCCG-CGCC--GGACCa -3'
miRNA:   3'- -GAGCUaGCUGU-GGCgGCGGuuCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 20594 0.69 0.477275
Target:  5'- -cCGGUgcugUGGCGCCGUCGCCAGuGACUu -3'
miRNA:   3'- gaGCUA----GCUGUGGCGGCGGUUcCUGG- -5'
12417 3' -56.6 NC_003324.1 + 29458 0.69 0.487231
Target:  5'- cCUCGAcgaUGACACgGCCGCCuggcugcGGGCg -3'
miRNA:   3'- -GAGCUa--GCUGUGgCGGCGGuu-----CCUGg -5'
12417 3' -56.6 NC_003324.1 + 49577 0.69 0.497286
Target:  5'- --aGAaCGGCACCGUCGUUGAGGcugACCa -3'
miRNA:   3'- gagCUaGCUGUGGCGGCGGUUCC---UGG- -5'
12417 3' -56.6 NC_003324.1 + 52980 0.69 0.497286
Target:  5'- -aCGAgcgCGAC-CUGCCGCCAAugaagcGGAUCc -3'
miRNA:   3'- gaGCUa--GCUGuGGCGGCGGUU------CCUGG- -5'
12417 3' -56.6 NC_003324.1 + 28118 0.7 0.467419
Target:  5'- uCUCGAUCGAgaUAUCcaacCCGCCAAGGcggaugcgGCCg -3'
miRNA:   3'- -GAGCUAGCU--GUGGc---GGCGGUUCC--------UGG- -5'
12417 3' -56.6 NC_003324.1 + 42124 0.7 0.467419
Target:  5'- aCUCG-UCGccaAUGCCGCCGC-GGGGAUCa -3'
miRNA:   3'- -GAGCuAGC---UGUGGCGGCGgUUCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.