miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12417 3' -56.6 NC_003324.1 + 15284 0.67 0.634128
Target:  5'- uUCGAgguuUCGuCcCCGCCGUCAcGGGCg -3'
miRNA:   3'- gAGCU----AGCuGuGGCGGCGGUuCCUGg -5'
12417 3' -56.6 NC_003324.1 + 2800 0.69 0.487231
Target:  5'- -gCGAUCGGCuaucgcuuggagACUGCCGCCGccGACa -3'
miRNA:   3'- gaGCUAGCUG------------UGGCGGCGGUucCUGg -5'
12417 3' -56.6 NC_003324.1 + 22320 0.69 0.497286
Target:  5'- -gCGAUCGGCAagacgUUGCCGCUcccgAAGGugCg -3'
miRNA:   3'- gaGCUAGCUGU-----GGCGGCGG----UUCCugG- -5'
12417 3' -56.6 NC_003324.1 + 43241 0.74 0.273083
Target:  5'- gCUCgGAUUGGCGCucgcucaacaagcuCGCCGUCGAGGACg -3'
miRNA:   3'- -GAG-CUAGCUGUG--------------GCGGCGGUUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 45905 0.75 0.242719
Target:  5'- cCUCauUCGGCGCCGCCGCUucGGAa- -3'
miRNA:   3'- -GAGcuAGCUGUGGCGGCGGuuCCUgg -5'
12417 3' -56.6 NC_003324.1 + 33499 0.74 0.259805
Target:  5'- -gCGGuccUCGAUcCCGCCGCCAaacguaaugugcgaGGGGCCg -3'
miRNA:   3'- gaGCU---AGCUGuGGCGGCGGU--------------UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 33671 0.8 0.10341
Target:  5'- gCUCGAUaCGccuGCGCUGCCGCCAAGGcAUCa -3'
miRNA:   3'- -GAGCUA-GC---UGUGGCGGCGGUUCC-UGG- -5'
12417 3' -56.6 NC_003324.1 + 47575 0.68 0.569927
Target:  5'- -cCGAUCGACcCuCGCCGUCGA--GCCg -3'
miRNA:   3'- gaGCUAGCUGuG-GCGGCGGUUccUGG- -5'
12417 3' -56.6 NC_003324.1 + 24570 0.72 0.36673
Target:  5'- --aGAUCGuCACCGCUGCgGGcGACCa -3'
miRNA:   3'- gagCUAGCuGUGGCGGCGgUUcCUGG- -5'
12417 3' -56.6 NC_003324.1 + 35118 0.71 0.37525
Target:  5'- gUCG-UCGccaGCGCCGUCGCCGuuGACCu -3'
miRNA:   3'- gAGCuAGC---UGUGGCGGCGGUucCUGG- -5'
12417 3' -56.6 NC_003324.1 + 18316 0.68 0.569927
Target:  5'- cCUUGGU-GAgACCGCCaaagcgggcGCCGAGGAUUg -3'
miRNA:   3'- -GAGCUAgCUgUGGCGG---------CGGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 17619 0.68 0.548828
Target:  5'- gUUGAgcaCGAUGCCGCCGagcucgggcCCGAGGAUa -3'
miRNA:   3'- gAGCUa--GCUGUGGCGGC---------GGUUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 13333 0.69 0.507432
Target:  5'- gCUCGA-CGGCAgCCG-CGCC--GGACCa -3'
miRNA:   3'- -GAGCUaGCUGU-GGCgGCGGuuCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 16340 0.69 0.507432
Target:  5'- -gCGA-CGGCGuuGCCGUCGaucgcgucguccAGGACCu -3'
miRNA:   3'- gaGCUaGCUGUggCGGCGGU------------UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 52980 0.69 0.497286
Target:  5'- -aCGAgcgCGAC-CUGCCGCCAAugaagcGGAUCc -3'
miRNA:   3'- gaGCUa--GCUGuGGCGGCGGUU------CCUGG- -5'
12417 3' -56.6 NC_003324.1 + 29458 0.69 0.487231
Target:  5'- cCUCGAcgaUGACACgGCCGCCuggcugcGGGCg -3'
miRNA:   3'- -GAGCUa--GCUGUGgCGGCGGuu-----CCUGg -5'
12417 3' -56.6 NC_003324.1 + 49577 0.69 0.497286
Target:  5'- --aGAaCGGCACCGUCGUUGAGGcugACCa -3'
miRNA:   3'- gagCUaGCUGUGGCGGCGGUUCC---UGG- -5'
12417 3' -56.6 NC_003324.1 + 13066 0.71 0.383031
Target:  5'- -aCGAUuugcagcCGGUACCGCCGCCGccGACCg -3'
miRNA:   3'- gaGCUA-------GCUGUGGCGGCGGUucCUGG- -5'
12417 3' -56.6 NC_003324.1 + 2400 0.66 0.70877
Target:  5'- -aCGAUgaUGACACCGCCaacGCCGAuGAUg -3'
miRNA:   3'- gaGCUA--GCUGUGGCGG---CGGUUcCUGg -5'
12417 3' -56.6 NC_003324.1 + 18002 0.71 0.378695
Target:  5'- gUCGAUCG-CuucggauaccgauugGCCGgCGCCAcGGGCCa -3'
miRNA:   3'- gAGCUAGCuG---------------UGGCgGCGGUuCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.