miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12417 3' -56.6 NC_003324.1 + 8569 0.73 0.289021
Target:  5'- aUCGAuuUCGcGCGCUGgcucaCUGCCGAGGACCg -3'
miRNA:   3'- gAGCU--AGC-UGUGGC-----GGCGGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 4527 0.74 0.282003
Target:  5'- cCUCGAUCGACGCCaCCGaCAAGaugaGCCg -3'
miRNA:   3'- -GAGCUAGCUGUGGcGGCgGUUCc---UGG- -5'
12417 3' -56.6 NC_003324.1 + 33499 0.74 0.259805
Target:  5'- -gCGGuccUCGAUcCCGCCGCCAaacguaaugugcgaGGGGCCg -3'
miRNA:   3'- gaGCU---AGCUGuGGCGGCGGU--------------UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 45905 0.75 0.242719
Target:  5'- cCUCauUCGGCGCCGCCGCUucGGAa- -3'
miRNA:   3'- -GAGcuAGCUGUGGCGGCGGuuCCUgg -5'
12417 3' -56.6 NC_003324.1 + 49651 0.75 0.236633
Target:  5'- uUCGA-CGACGCUGCCGauauCAAGGGCg -3'
miRNA:   3'- gAGCUaGCUGUGGCGGCg---GUUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 31463 0.77 0.173177
Target:  5'- uCUCGGUCGAauaGCUGCCGUCGcuguuGGGACg -3'
miRNA:   3'- -GAGCUAGCUg--UGGCGGCGGU-----UCCUGg -5'
12417 3' -56.6 NC_003324.1 + 33671 0.8 0.10341
Target:  5'- gCUCGAUaCGccuGCGCUGCCGCCAAGGcAUCa -3'
miRNA:   3'- -GAGCUA-GC---UGUGGCGGCGGUUCC-UGG- -5'
12417 3' -56.6 NC_003324.1 + 8647 0.8 0.102555
Target:  5'- aUCGAUCgcaccgacuucuccGACACCGCCGCCAAgaucuGGAUCu -3'
miRNA:   3'- gAGCUAG--------------CUGUGGCGGCGGUU-----CCUGG- -5'
12417 3' -56.6 NC_003324.1 + 57137 0.67 0.633053
Target:  5'- gCUCGAaacccugcUGACGCCcCCgacugagugcgaaGCCAAGGGCCu -3'
miRNA:   3'- -GAGCUa-------GCUGUGGcGG-------------CGGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 30068 0.66 0.698239
Target:  5'- -cCGGUcgCGACACCgGCCGCUgcGGcuuCCu -3'
miRNA:   3'- gaGCUA--GCUGUGG-CGGCGGuuCCu--GG- -5'
12417 3' -56.6 NC_003324.1 + 19380 0.66 0.687647
Target:  5'- aUgGAUCGACGCCGgCGCgCGucGcGCCg -3'
miRNA:   3'- gAgCUAGCUGUGGCgGCG-GUucC-UGG- -5'
12417 3' -56.6 NC_003324.1 + 49142 0.66 0.687647
Target:  5'- gCUCGAUUGAgGugaucaaCGUCGCCAccgaAGGcACCa -3'
miRNA:   3'- -GAGCUAGCUgUg------GCGGCGGU----UCC-UGG- -5'
12417 3' -56.6 NC_003324.1 + 22210 0.66 0.687647
Target:  5'- gUUGGUgGGCuuGCCGCCGCgCAccuucGGGAgCg -3'
miRNA:   3'- gAGCUAgCUG--UGGCGGCG-GU-----UCCUgG- -5'
12417 3' -56.6 NC_003324.1 + 53395 0.66 0.677005
Target:  5'- uUUGAUCuGGCAUCGCgGUCAcGGcGCCu -3'
miRNA:   3'- gAGCUAG-CUGUGGCGgCGGUuCC-UGG- -5'
12417 3' -56.6 NC_003324.1 + 54413 0.66 0.677005
Target:  5'- aCUCcc-CGGgACCGCUGCC--GGGCCu -3'
miRNA:   3'- -GAGcuaGCUgUGGCGGCGGuuCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 52820 0.66 0.666321
Target:  5'- -cUGGUCGACAa--CCGCCAaacAGGACa -3'
miRNA:   3'- gaGCUAGCUGUggcGGCGGU---UCCUGg -5'
12417 3' -56.6 NC_003324.1 + 7323 0.66 0.666321
Target:  5'- -cCG-UCGuu-CCGCgCGCCGAGGGCa -3'
miRNA:   3'- gaGCuAGCuguGGCG-GCGGUUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 38477 0.67 0.644873
Target:  5'- -gUGAUCGACgagGCCGaCCGCCu-GGugaaACCa -3'
miRNA:   3'- gaGCUAGCUG---UGGC-GGCGGuuCC----UGG- -5'
12417 3' -56.6 NC_003324.1 + 17749 0.67 0.633053
Target:  5'- -cCGAUUG-UGCCGgugacacCCGCCAucAGGGCCa -3'
miRNA:   3'- gaGCUAGCuGUGGC-------GGCGGU--UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 5045 1.1 0.000738
Target:  5'- uCUCGAUCGACACCGCCGCCAAGGACCc -3'
miRNA:   3'- -GAGCUAGCUGUGGCGGCGGUUCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.