Results 41 - 46 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 12419 | 3' | -54.3 | NC_003324.1 | + | 4932 | 0.66 | 0.778441 |
|
Target: 5'- uCGACCG--GCCgcaaCGUUGuugcCGGCGCCa -3' miRNA: 3'- -GUUGGCuuUGGag--GCAACc---GCCGUGG- -5' |
|||||||
| 12419 | 3' | -54.3 | NC_003324.1 | + | 29315 | 0.67 | 0.758212 |
|
Target: 5'- --cCCGAAcaGCCgCCGUcuUGGUGagcGCACCg -3' miRNA: 3'- guuGGCUU--UGGaGGCA--ACCGC---CGUGG- -5' |
|||||||
| 12419 | 3' | -54.3 | NC_003324.1 | + | 25011 | 0.67 | 0.758212 |
|
Target: 5'- uCGAUCGAGACaCUgCGaccgGGCGGCguGCUg -3' miRNA: 3'- -GUUGGCUUUG-GAgGCaa--CCGCCG--UGG- -5' |
|||||||
| 12419 | 3' | -54.3 | NC_003324.1 | + | 42005 | 0.67 | 0.73747 |
|
Target: 5'- gAACgCGguACCUCCGgauGCGGCgACUg -3' miRNA: 3'- gUUG-GCuuUGGAGGCaacCGCCG-UGG- -5' |
|||||||
| 12419 | 3' | -54.3 | NC_003324.1 | + | 34068 | 0.67 | 0.716305 |
|
Target: 5'- cCGACCGAAucgggcuccGCCuuUCCGUcgGGCgGGUGCUu -3' miRNA: 3'- -GUUGGCUU---------UGG--AGGCAa-CCG-CCGUGG- -5' |
|||||||
| 12419 | 3' | -54.3 | NC_003324.1 | + | 30483 | 0.77 | 0.238986 |
|
Target: 5'- cCAAUCgGAAGCCUCCGUauccuggucgagGGCGGCAUg -3' miRNA: 3'- -GUUGG-CUUUGGAGGCAa-----------CCGCCGUGg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home