miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12420 3' -52.8 NC_003324.1 + 16447 0.66 0.868703
Target:  5'- gGGGCu-GUU-GUCgGGCUUGGCGGc- -3'
miRNA:   3'- -CCCGuuCAGcCAGgUUGAACCGCUuc -5'
12420 3' -52.8 NC_003324.1 + 28608 0.66 0.834496
Target:  5'- cGGCAGGccucaguggucUCGGUCCGAag-GGCGc-- -3'
miRNA:   3'- cCCGUUC-----------AGCCAGGUUgaaCCGCuuc -5'
12420 3' -52.8 NC_003324.1 + 54354 0.67 0.819805
Target:  5'- cGGGCAcuaucuccgcaaGGUCGGUCgCAcCUUcgaaacgaucuaucaGGCGAAc -3'
miRNA:   3'- -CCCGU------------UCAGCCAG-GUuGAA---------------CCGCUUc -5'
12420 3' -52.8 NC_003324.1 + 40264 0.68 0.74584
Target:  5'- -uGCGug-CGGUCCGggGCUUGGCGGGu -3'
miRNA:   3'- ccCGUucaGCCAGGU--UGAACCGCUUc -5'
12420 3' -52.8 NC_003324.1 + 33069 0.68 0.724542
Target:  5'- -uGCGGGaCGGUUCGGCaUUGGCGAc- -3'
miRNA:   3'- ccCGUUCaGCCAGGUUG-AACCGCUuc -5'
12420 3' -52.8 NC_003324.1 + 29929 0.69 0.713747
Target:  5'- cGGCGcGgcccaCGGUCCGGacgGGCGAGGg -3'
miRNA:   3'- cCCGUuCa----GCCAGGUUgaaCCGCUUC- -5'
12420 3' -52.8 NC_003324.1 + 28230 0.69 0.701776
Target:  5'- cGGCAacuacaaGGUCGGccgcaUCCGcCUUGGCGGGu -3'
miRNA:   3'- cCCGU-------UCAGCC-----AGGUuGAACCGCUUc -5'
12420 3' -52.8 NC_003324.1 + 34470 0.69 0.669856
Target:  5'- cGGCGAGUCGccuaUCuCGaucGCUUGGCGAAc -3'
miRNA:   3'- cCCGUUCAGCc---AG-GU---UGAACCGCUUc -5'
12420 3' -52.8 NC_003324.1 + 24288 0.7 0.647648
Target:  5'- uGGGCAcGgCGG---AGCUUGGCGAAGg -3'
miRNA:   3'- -CCCGUuCaGCCaggUUGAACCGCUUC- -5'
12420 3' -52.8 NC_003324.1 + 20798 0.71 0.592049
Target:  5'- uGGCGAGgcggCGGaCCGugUUGGUGAc- -3'
miRNA:   3'- cCCGUUCa---GCCaGGUugAACCGCUuc -5'
12420 3' -52.8 NC_003324.1 + 16128 0.71 0.580996
Target:  5'- cGGCAAGUC-GUCgAACUUGGCc--- -3'
miRNA:   3'- cCCGUUCAGcCAGgUUGAACCGcuuc -5'
12420 3' -52.8 NC_003324.1 + 6092 1.11 0.001419
Target:  5'- aGGGCAAGUCGGUCCAACUUGGCGAAGu -3'
miRNA:   3'- -CCCGUUCAGCCAGGUUGAACCGCUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.