Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12421 | 3' | -55.5 | NC_003324.1 | + | 6465 | 1.05 | 0.00142 |
Target: 5'- aAUCGACGGCAAGGCAACACUGCAGCUc -3' miRNA: 3'- -UAGCUGCCGUUCCGUUGUGACGUCGA- -5' |
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12421 | 3' | -55.5 | NC_003324.1 | + | 50782 | 0.8 | 0.090803 |
Target: 5'- cGUCGACGGCGAcGGCAAUGCUGCcacaccggAGCa -3' miRNA: 3'- -UAGCUGCCGUU-CCGUUGUGACG--------UCGa -5' |
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12421 | 3' | -55.5 | NC_003324.1 | + | 153 | 0.77 | 0.160618 |
Target: 5'- cUCGACGGCcggcgcauAAGaGCGugGCUGCGGCa -3' miRNA: 3'- uAGCUGCCG--------UUC-CGUugUGACGUCGa -5' |
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12421 | 3' | -55.5 | NC_003324.1 | + | 21380 | 0.75 | 0.19484 |
Target: 5'- uAUCGcCGGCGAGGCGGCGaacGCGGCc -3' miRNA: 3'- -UAGCuGCCGUUCCGUUGUga-CGUCGa -5' |
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12421 | 3' | -55.5 | NC_003324.1 | + | 43189 | 0.74 | 0.220669 |
Target: 5'- cUCGACgaaGGCAAGGCGcacccacgucuucCACUGCAGCg -3' miRNA: 3'- uAGCUG---CCGUUCCGUu------------GUGACGUCGa -5' |
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12421 | 3' | -55.5 | NC_003324.1 | + | 54043 | 0.74 | 0.254656 |
Target: 5'- gAUUGGCGcGCAgAGGCuuuCGCUGCGGCg -3' miRNA: 3'- -UAGCUGC-CGU-UCCGuu-GUGACGUCGa -5' |
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12421 | 3' | -55.5 | NC_003324.1 | + | 6103 | 0.74 | 0.254656 |
Target: 5'- uGUCGuCGGCAggagcggacuGGGCGGCaAUUGCGGCUu -3' miRNA: 3'- -UAGCuGCCGU----------UCCGUUG-UGACGUCGA- -5' |
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12421 | 3' | -55.5 | NC_003324.1 | + | 16815 | 0.73 | 0.28179 |
Target: 5'- -gUGACGGCAagcaucaAGGCGGCACUGguGa- -3' miRNA: 3'- uaGCUGCCGU-------UCCGUUGUGACguCga -5' |
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12421 | 3' | -55.5 | NC_003324.1 | + | 26453 | 0.73 | 0.28543 |
Target: 5'- cAUCGACGGCAAugucGGCGACAucaauugcucgaccuCgGCAGCg -3' miRNA: 3'- -UAGCUGCCGUU----CCGUUGU---------------GaCGUCGa -5' |
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12421 | 3' | -55.5 | NC_003324.1 | + | 1096 | 0.73 | 0.289847 |
Target: 5'- uUCGACGGCAAGGagaaGACGCUuGUcaucGGCa -3' miRNA: 3'- uAGCUGCCGUUCCg---UUGUGA-CG----UCGa -5' |
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12421 | 3' | -55.5 | NC_003324.1 | + | 49532 | 0.71 | 0.362541 |
Target: 5'- uAUCGAgCGGCGAGGCGACG-UGCAu-- -3' miRNA: 3'- -UAGCU-GCCGUUCCGUUGUgACGUcga -5' |
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12421 | 3' | -55.5 | NC_003324.1 | + | 24008 | 0.7 | 0.417592 |
Target: 5'- -gCGGCGGUAGGGCu--GCUGCGuGCg -3' miRNA: 3'- uaGCUGCCGUUCCGuugUGACGU-CGa -5' |
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12421 | 3' | -55.5 | NC_003324.1 | + | 13164 | 0.7 | 0.427251 |
Target: 5'- cGUCGGCGGCGGucGGCGGCg--GCGGUa -3' miRNA: 3'- -UAGCUGCCGUU--CCGUUGugaCGUCGa -5' |
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12421 | 3' | -55.5 | NC_003324.1 | + | 16164 | 0.69 | 0.457003 |
Target: 5'- cAUCGcUGGCAccgAGGCgGGCACcGCAGCUc -3' miRNA: 3'- -UAGCuGCCGU---UCCG-UUGUGaCGUCGA- -5' |
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12421 | 3' | -55.5 | NC_003324.1 | + | 22695 | 0.69 | 0.467165 |
Target: 5'- cGUCGcGgGGCucGGCAACGCggcagGCAGCc -3' miRNA: 3'- -UAGC-UgCCGuuCCGUUGUGa----CGUCGa -5' |
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12421 | 3' | -55.5 | NC_003324.1 | + | 40434 | 0.69 | 0.477442 |
Target: 5'- aAUCGGCaGCGAaagccGGCAAgacUGCUGCAGCg -3' miRNA: 3'- -UAGCUGcCGUU-----CCGUU---GUGACGUCGa -5' |
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12421 | 3' | -55.5 | NC_003324.1 | + | 49051 | 0.69 | 0.495165 |
Target: 5'- -gCGGCGGCGGGGCAauccauccggcucuGCACcGgGGCc -3' miRNA: 3'- uaGCUGCCGUUCCGU--------------UGUGaCgUCGa -5' |
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12421 | 3' | -55.5 | NC_003324.1 | + | 57380 | 0.69 | 0.498324 |
Target: 5'- cUCGGCGGaggcgAGGGCGGCACgacCGGCg -3' miRNA: 3'- uAGCUGCCg----UUCCGUUGUGac-GUCGa -5' |
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12421 | 3' | -55.5 | NC_003324.1 | + | 35484 | 0.68 | 0.504668 |
Target: 5'- -cCGAgGGCGaggaaaccaugcgcGGGCGGCcgagcagGCUGCAGCa -3' miRNA: 3'- uaGCUgCCGU--------------UCCGUUG-------UGACGUCGa -5' |
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12421 | 3' | -55.5 | NC_003324.1 | + | 26720 | 0.68 | 0.519603 |
Target: 5'- -gCGACGcaGCAGGGCGcggGCcuuuuCUGCAGCa -3' miRNA: 3'- uaGCUGC--CGUUCCGU---UGu----GACGUCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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