miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12421 3' -55.5 NC_003324.1 + 153 0.77 0.160618
Target:  5'- cUCGACGGCcggcgcauAAGaGCGugGCUGCGGCa -3'
miRNA:   3'- uAGCUGCCG--------UUC-CGUugUGACGUCGa -5'
12421 3' -55.5 NC_003324.1 + 1096 0.73 0.289847
Target:  5'- uUCGACGGCAAGGagaaGACGCUuGUcaucGGCa -3'
miRNA:   3'- uAGCUGCCGUUCCg---UUGUGA-CG----UCGa -5'
12421 3' -55.5 NC_003324.1 + 3165 0.66 0.663602
Target:  5'- cUCGaAUGGCAAGaGCGggaGCGCcgUGCGGCc -3'
miRNA:   3'- uAGC-UGCCGUUC-CGU---UGUG--ACGUCGa -5'
12421 3' -55.5 NC_003324.1 + 6103 0.74 0.254656
Target:  5'- uGUCGuCGGCAggagcggacuGGGCGGCaAUUGCGGCUu -3'
miRNA:   3'- -UAGCuGCCGU----------UCCGUUG-UGACGUCGA- -5'
12421 3' -55.5 NC_003324.1 + 6465 1.05 0.00142
Target:  5'- aAUCGACGGCAAGGCAACACUGCAGCUc -3'
miRNA:   3'- -UAGCUGCCGUUCCGUUGUGACGUCGA- -5'
12421 3' -55.5 NC_003324.1 + 7543 0.66 0.652422
Target:  5'- gGUCGGgauuuUGGCucucGGGCAGCACagcacucggGCAGCa -3'
miRNA:   3'- -UAGCU-----GCCGu---UCCGUUGUGa--------CGUCGa -5'
12421 3' -55.5 NC_003324.1 + 13164 0.7 0.427251
Target:  5'- cGUCGGCGGCGGucGGCGGCg--GCGGUa -3'
miRNA:   3'- -UAGCUGCCGUU--CCGUUGugaCGUCGa -5'
12421 3' -55.5 NC_003324.1 + 14598 0.67 0.607614
Target:  5'- -cCGGCGGCGcAGGCGguaGCgugGCGGCc -3'
miRNA:   3'- uaGCUGCCGU-UCCGUug-UGa--CGUCGa -5'
12421 3' -55.5 NC_003324.1 + 16164 0.69 0.457003
Target:  5'- cAUCGcUGGCAccgAGGCgGGCACcGCAGCUc -3'
miRNA:   3'- -UAGCuGCCGU---UCCG-UUGUGaCGUCGA- -5'
12421 3' -55.5 NC_003324.1 + 16815 0.73 0.28179
Target:  5'- -gUGACGGCAagcaucaAGGCGGCACUGguGa- -3'
miRNA:   3'- uaGCUGCCGU-------UCCGUUGUGACguCga -5'
12421 3' -55.5 NC_003324.1 + 18518 0.67 0.607614
Target:  5'- -cCGGCGGCAAGGUcGCGCagaccagacCAGCg -3'
miRNA:   3'- uaGCUGCCGUUCCGuUGUGac-------GUCGa -5'
12421 3' -55.5 NC_003324.1 + 18713 0.67 0.62329
Target:  5'- cAUCGACu-CGAGGUAACGCUGCcauaccugauccaucAGCUc -3'
miRNA:   3'- -UAGCUGccGUUCCGUUGUGACG---------------UCGA- -5'
12421 3' -55.5 NC_003324.1 + 21380 0.75 0.19484
Target:  5'- uAUCGcCGGCGAGGCGGCGaacGCGGCc -3'
miRNA:   3'- -UAGCuGCCGUUCCGUUGUga-CGUCGa -5'
12421 3' -55.5 NC_003324.1 + 22593 0.66 0.641223
Target:  5'- gAUCGGCGGCcuuuuGGCuGC-CUGCcGCg -3'
miRNA:   3'- -UAGCUGCCGuu---CCGuUGuGACGuCGa -5'
12421 3' -55.5 NC_003324.1 + 22695 0.69 0.467165
Target:  5'- cGUCGcGgGGCucGGCAACGCggcagGCAGCc -3'
miRNA:   3'- -UAGC-UgCCGuuCCGUUGUGa----CGUCGa -5'
12421 3' -55.5 NC_003324.1 + 24008 0.7 0.417592
Target:  5'- -gCGGCGGUAGGGCu--GCUGCGuGCg -3'
miRNA:   3'- uaGCUGCCGUUCCGuugUGACGU-CGa -5'
12421 3' -55.5 NC_003324.1 + 26453 0.73 0.28543
Target:  5'- cAUCGACGGCAAugucGGCGACAucaauugcucgaccuCgGCAGCg -3'
miRNA:   3'- -UAGCUGCCGUU----CCGUUGU---------------GaCGUCGa -5'
12421 3' -55.5 NC_003324.1 + 26720 0.68 0.519603
Target:  5'- -gCGACGcaGCAGGGCGcggGCcuuuuCUGCAGCa -3'
miRNA:   3'- uaGCUGC--CGUUCCGU---UGu----GACGUCGa -5'
12421 3' -55.5 NC_003324.1 + 26922 0.66 0.651303
Target:  5'- -aUGGCGGCGaucgacgAGGCAcucaGCGgaGCGGCg -3'
miRNA:   3'- uaGCUGCCGU-------UCCGU----UGUgaCGUCGa -5'
12421 3' -55.5 NC_003324.1 + 30363 0.67 0.618808
Target:  5'- uUCGGCGGCuuGGGCGACcgUGCcuuGGCc -3'
miRNA:   3'- uAGCUGCCGu-UCCGUUGugACG---UCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.