Results 21 - 37 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12421 | 3' | -55.5 | NC_003324.1 | + | 57380 | 0.69 | 0.498324 |
Target: 5'- cUCGGCGGaggcgAGGGCGGCACgacCGGCg -3' miRNA: 3'- uAGCUGCCg----UUCCGUUGUGac-GUCGa -5' |
|||||||
12421 | 3' | -55.5 | NC_003324.1 | + | 40434 | 0.69 | 0.477442 |
Target: 5'- aAUCGGCaGCGAaagccGGCAAgacUGCUGCAGCg -3' miRNA: 3'- -UAGCUGcCGUU-----CCGUU---GUGACGUCGa -5' |
|||||||
12421 | 3' | -55.5 | NC_003324.1 | + | 22695 | 0.69 | 0.467165 |
Target: 5'- cGUCGcGgGGCucGGCAACGCggcagGCAGCc -3' miRNA: 3'- -UAGC-UgCCGuuCCGUUGUGa----CGUCGa -5' |
|||||||
12421 | 3' | -55.5 | NC_003324.1 | + | 13164 | 0.7 | 0.427251 |
Target: 5'- cGUCGGCGGCGGucGGCGGCg--GCGGUa -3' miRNA: 3'- -UAGCUGCCGUU--CCGUUGugaCGUCGa -5' |
|||||||
12421 | 3' | -55.5 | NC_003324.1 | + | 6103 | 0.74 | 0.254656 |
Target: 5'- uGUCGuCGGCAggagcggacuGGGCGGCaAUUGCGGCUu -3' miRNA: 3'- -UAGCuGCCGU----------UCCGUUG-UGACGUCGA- -5' |
|||||||
12421 | 3' | -55.5 | NC_003324.1 | + | 21380 | 0.75 | 0.19484 |
Target: 5'- uAUCGcCGGCGAGGCGGCGaacGCGGCc -3' miRNA: 3'- -UAGCuGCCGUUCCGUUGUga-CGUCGa -5' |
|||||||
12421 | 3' | -55.5 | NC_003324.1 | + | 33049 | 0.68 | 0.530376 |
Target: 5'- -gCGACGGCGA-GCAGa--UGCAGCg -3' miRNA: 3'- uaGCUGCCGUUcCGUUgugACGUCGa -5' |
|||||||
12421 | 3' | -55.5 | NC_003324.1 | + | 42201 | 0.67 | 0.563151 |
Target: 5'- -gCGGCGGCAuuGGCGACGagUGCgaAGCg -3' miRNA: 3'- uaGCUGCCGUu-CCGUUGUg-ACG--UCGa -5' |
|||||||
12421 | 3' | -55.5 | NC_003324.1 | + | 47652 | 0.67 | 0.573094 |
Target: 5'- cUCGACGGCGAGGgucgaucggcccuCGucauccaccaugGCACUGCcGCa -3' miRNA: 3'- uAGCUGCCGUUCC-------------GU------------UGUGACGuCGa -5' |
|||||||
12421 | 3' | -55.5 | NC_003324.1 | + | 48575 | 0.67 | 0.574202 |
Target: 5'- -aUGAgGGCAAGGaCAGCGgCgucGCAGCg -3' miRNA: 3'- uaGCUgCCGUUCC-GUUGU-Ga--CGUCGa -5' |
|||||||
12421 | 3' | -55.5 | NC_003324.1 | + | 18518 | 0.67 | 0.607614 |
Target: 5'- -cCGGCGGCAAGGUcGCGCagaccagacCAGCg -3' miRNA: 3'- uaGCUGCCGUUCCGuUGUGac-------GUCGa -5' |
|||||||
12421 | 3' | -55.5 | NC_003324.1 | + | 30363 | 0.67 | 0.618808 |
Target: 5'- uUCGGCGGCuuGGGCGACcgUGCcuuGGCc -3' miRNA: 3'- uAGCUGCCGu-UCCGUUGugACG---UCGa -5' |
|||||||
12421 | 3' | -55.5 | NC_003324.1 | + | 31247 | 0.66 | 0.634498 |
Target: 5'- -cUGAUGGCGcaggccGGGCAGCuccgcgaggcaggcCUGCAGCg -3' miRNA: 3'- uaGCUGCCGU------UCCGUUGu-------------GACGUCGa -5' |
|||||||
12421 | 3' | -55.5 | NC_003324.1 | + | 26922 | 0.66 | 0.651303 |
Target: 5'- -aUGGCGGCGaucgacgAGGCAcucaGCGgaGCGGCg -3' miRNA: 3'- uaGCUGCCGU-------UCCGU----UGUgaCGUCGa -5' |
|||||||
12421 | 3' | -55.5 | NC_003324.1 | + | 7543 | 0.66 | 0.652422 |
Target: 5'- gGUCGGgauuuUGGCucucGGGCAGCACagcacucggGCAGCa -3' miRNA: 3'- -UAGCU-----GCCGu---UCCGUUGUGa--------CGUCGa -5' |
|||||||
12421 | 3' | -55.5 | NC_003324.1 | + | 3165 | 0.66 | 0.663602 |
Target: 5'- cUCGaAUGGCAAGaGCGggaGCGCcgUGCGGCc -3' miRNA: 3'- uAGC-UGCCGUUC-CGU---UGUG--ACGUCGa -5' |
|||||||
12421 | 3' | -55.5 | NC_003324.1 | + | 153 | 0.77 | 0.160618 |
Target: 5'- cUCGACGGCcggcgcauAAGaGCGugGCUGCGGCa -3' miRNA: 3'- uAGCUGCCG--------UUC-CGUugUGACGUCGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home